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    Ccdc150 coiled-coil domain containing 150 [ Mus musculus (house mouse) ]

    Gene ID: 78016, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ccdc150provided by MGI
    Official Full Name
    coiled-coil domain containing 150provided by MGI
    Primary source
    MGI:MGI:1925266
    See related
    Ensembl:ENSMUSG00000025983 AllianceGenome:MGI:1925266
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930511H11Rik
    Summary
    Orthologous to human CCDC150 (coiled-coil domain containing 150). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 5.1) and CNS E11.5 (RPKM 0.3) See more
    Orthologs
    human all
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    Genomic context

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    See Ccdc150 in Genome Data Viewer
    Location:
    1 C1.1; 1 27.06 cM
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (54289820..54407893)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (54250661..54368727)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:53951535-53951718 Neighboring gene STARR-positive B cell enhancer ABC_E9464 Neighboring gene predicted gene, 24251 Neighboring gene STARR-seq mESC enhancer starr_00927 Neighboring gene STARR-seq mESC enhancer starr_00928 Neighboring gene STARR-seq mESC enhancer starr_00929 Neighboring gene STARR-seq mESC enhancer starr_00930 Neighboring gene STARR-seq mESC enhancer starr_00931 Neighboring gene STARR-seq mESC enhancer starr_00932 Neighboring gene predicted gene, 51622 Neighboring gene predicted gene, 25829 Neighboring gene STARR-seq mESC enhancer starr_00933 Neighboring gene STARR-seq mESC enhancer starr_00934 Neighboring gene STARR-seq mESC enhancer starr_00935 Neighboring gene general transcription factor IIIC, polypeptide 3 Neighboring gene predicted gene, 34066

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 150

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030025.3 → NP_084301.2  coiled-coil domain-containing protein 150

      See identical proteins and their annotated locations for NP_084301.2

      Status: VALIDATED

      Source sequence(s)
      AC124175, AC124538
      Consensus CDS
      CCDS35564.1
      UniProtKB/Swiss-Prot
      E9QMC0, Q8CDI7
      Related
      ENSMUSP00000027128.5, ENSMUST00000027128.11
      Conserved Domains (3) summary
      COG3883
      Location:456 → 675
      CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]
      pfam00038
      Location:733 → 1005
      Filament; Intermediate filament protein
      cl09914
      Location:758 → 898
      PHA_synth_III_E; Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)

    RNA

    1. NR_182040.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC124175, AC124538
      Related
      ENSMUST00000160472.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      54289820..54407893
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017312896.1 → XP_017168385.1  coiled-coil domain-containing protein 150 isoform X1

      Conserved Domains (1) summary
      COG1196
      Location:214 → 1027
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_006496332.1 → XP_006496395.1  coiled-coil domain-containing protein 150 isoform X3

      Conserved Domains (1) summary
      COG1196
      Location:214 → 1024
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. XM_017312900.1 → XP_017168389.1  coiled-coil domain-containing protein 150 isoform X4

      Conserved Domains (2) summary
      COG5022
      Location:161 → 464
      COG5022; Myosin heavy chain [General function prediction only]
      TIGR02168
      Location:382 → 1009
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. XM_017312903.1 → XP_017168392.1  coiled-coil domain-containing protein 150 isoform X7

      Conserved Domains (1) summary
      COG1196
      Location:83 → 845
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    5. XM_030243620.1 → XP_030099480.1  coiled-coil domain-containing protein 150 isoform X6

      Conserved Domains (1) summary
      COG1196
      Location:153 → 915
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    6. XM_030243616.1 → XP_030099476.1  coiled-coil domain-containing protein 150 isoform X5

      Conserved Domains (2) summary
      COG1196
      Location:153 → 915
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:807 → 1042
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    7. XM_006496341.3 → XP_006496404.1  coiled-coil domain-containing protein 150 isoform X14

      UniProtKB/TrEMBL
      E9Q7E1
      Conserved Domains (1) summary
      COG1196
      Location:214 → 551
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    8. XM_017312918.1 → XP_017168407.1  coiled-coil domain-containing protein 150 isoform X10

      UniProtKB/TrEMBL
      E9Q7E1
      Conserved Domains (1) summary
      COG1196
      Location:214 → 551
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    9. XM_036154406.1 → XP_036010299.1  coiled-coil domain-containing protein 150 isoform X13

      UniProtKB/TrEMBL
      E9Q7E1
      Conserved Domains (1) summary
      COG1196
      Location:214 → 551
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    10. XM_017312916.1 → XP_017168405.1  coiled-coil domain-containing protein 150 isoform X9

      UniProtKB/TrEMBL
      E9Q7E1
      Conserved Domains (1) summary
      COG1196
      Location:214 → 551
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    11. XM_017312920.2 → XP_017168409.1  coiled-coil domain-containing protein 150 isoform X11

      UniProtKB/TrEMBL
      E9Q7E1
      Conserved Domains (1) summary
      COG1196
      Location:214 → 551
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    12. XM_017312898.1 → XP_017168387.1  coiled-coil domain-containing protein 150 isoform X2

      Conserved Domains (1) summary
      COG1196
      Location:132 → 894
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    13. XM_017312907.1 → XP_017168396.1  coiled-coil domain-containing protein 150 isoform X8

      Conserved Domains (1) summary
      TIGR02168
      Location:170 → 797
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    14. XM_017312906.1 → XP_017168395.1  coiled-coil domain-containing protein 150 isoform X8

      Conserved Domains (1) summary
      TIGR02168
      Location:170 → 797
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    15. XM_017312913.2 → XP_017168402.1  coiled-coil domain-containing protein 150 isoform X8

      Conserved Domains (1) summary
      TIGR02168
      Location:170 → 797
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    16. XM_006496340.3 → XP_006496403.1  coiled-coil domain-containing protein 150 isoform X12

      See identical proteins and their annotated locations for XP_006496403.1

      UniProtKB/TrEMBL
      A0A571BEL4
      Related
      ENSMUSP00000158733.2, ENSMUST00000163072.8
      Conserved Domains (2) summary
      COG1196
      Location:262 → 553
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:118 → 395
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RNA

    1. XR_001778458.1 RNA Sequence

    2. XR_001778457.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CDI7.2 GenPept UniProtKB/Swiss-Prot:Q8CDI7

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