U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    4930524B15Rik RIKEN cDNA 4930524B15 gene [ Mus musculus (house mouse) ]

    Gene ID: 67592, updated on 27-Nov-2024

    Summary

    Official Symbol
    4930524B15Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930524B15 geneprovided by MGI
    Primary source
    MGI:MGI:1914842
    See related
    Ensembl:ENSMUSG00000020299 AllianceGenome:MGI:1914842
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C5orf47 (chromosome 5 open reading frame 47). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 14.1) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 4930524B15Rik in Genome Data Viewer
    Location:
    11 A4; 11 18.71 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (31915577..31929653)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (31965554..31979655)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene cytoplasmic polyadenylation element binding protein 4 Neighboring gene STARR-positive B cell enhancer mm9_chr11:31822573-31822874 Neighboring gene von Hippel-Lindau binding protein 1 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2982 Neighboring gene S-adenosylmethionine decarboxylase, pseudogene 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_29098 Neighboring gene STARR-seq mESC enhancer starr_29099 Neighboring gene predicted gene, 35267 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:31899676-31899877 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:31899887-31900116 Neighboring gene neuron specific gene family member 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:31968884-31969085 Neighboring gene STARR-seq mESC enhancer starr_29101 Neighboring gene predicted gene 12108

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C5orf47 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417868.1NP_001404797.1  uncharacterized protein C5orf47 homolog

      Status: VALIDATED

      Source sequence(s)
      AL662793, AL669946
      UniProtKB/Swiss-Prot
      Q24JP4, Q8CER9, Q9CQS0
    2. NM_026262.2NP_080538.1  uncharacterized protein C5orf47 homolog

      See identical proteins and their annotated locations for NP_080538.1

      Status: VALIDATED

      Source sequence(s)
      AL662793, AL669946
      Consensus CDS
      CCDS24515.1
      UniProtKB/Swiss-Prot
      Q24JP4, Q8CER9, Q9CQS0
      Related
      ENSMUSP00000099893.4, ENSMUST00000102829.4
      Conserved Domains (1) summary
      pfam15730
      Location:26165
      DUF4680; Domain of unknown function (DUF4680)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      31915577..31929653
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)