U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gm11437 predicted gene 11437 [ Mus musculus (house mouse) ]

    Gene ID: 628813, updated on 9-Dec-2024

    Summary

    Official Symbol
    Gm11437provided by MGI
    Official Full Name
    predicted gene 11437provided by MGI
    Primary source
    MGI:MGI:3650287
    See related
    Ensembl:ENSMUSG00000051452 AllianceGenome:MGI:3650287
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in membrane. Orthologous to human C17orf78 (chromosome 17 open reading frame 78). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in large intestine adult (RPKM 8.1), small intestine adult (RPKM 2.5) and 2 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Gm11437 in Genome Data Viewer
    Location:
    11 C; 11 51.29 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (84039187..84058302, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (84148361..84167476, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 14 Neighboring gene STARR-seq mESC enhancer starr_30212 Neighboring gene transcriptional adaptor 2A Neighboring gene acetyl-Coenzyme A carboxylase alpha Neighboring gene 60S ribosomal protein L35 pseudogene Neighboring gene STARR-seq mESC enhancer starr_30214 Neighboring gene STARR-positive B cell enhancer mm9_chr11:84077985-84078286 Neighboring gene STARR-seq mESC enhancer starr_30216 Neighboring gene STARR-seq mESC enhancer starr_30218 Neighboring gene STARR-seq mESC enhancer starr_30219 Neighboring gene apoptosis antagonizing transcription factor Neighboring gene STARR-seq mESC enhancer starr_30220

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Clone Names

    • FLJ39647

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C17orf78 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037932.2NP_001033021.2  uncharacterized protein C17orf78 homolog

      See identical proteins and their annotated locations for NP_001033021.2

      Status: VALIDATED

      Source sequence(s)
      AL596447, BC147775
      Consensus CDS
      CCDS25184.1
      UniProtKB/Swiss-Prot
      B0QZI9, B9EK11, Q5QR91, Q5SWU4
      Related
      ENSMUSP00000056084.8, ENSMUST00000050771.8
      Conserved Domains (1) summary
      pfam15829
      Location:1226
      DUF4711; Domain of unknown function (DUF4711)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      84039187..84058302 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)