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    Ccdc112 coiled-coil domain containing 112 [ Mus musculus (house mouse) ]

    Gene ID: 240261, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ccdc112provided by MGI
    Official Full Name
    coiled-coil domain containing 112provided by MGI
    Primary source
    MGI:MGI:1918800
    See related
    Ensembl:ENSMUSG00000071855 AllianceGenome:MGI:1918800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    8430438M01Rik
    Summary
    Predicted to be located in centriolar satellite. Orthologous to human CCDC112 (coiled-coil domain containing 112). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in CNS E18 (RPKM 3.5), CNS E14 (RPKM 2.8) and 11 other tissues See more
    Orthologs
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    Genomic context

    See Ccdc112 in Genome Data Viewer
    Location:
    18 C; 18 24.48 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (46415218..46445016, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (46282151..46311950, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52364 Neighboring gene protein geranylgeranyltransferase type I, beta subunit Neighboring gene STARR-positive B cell enhancer ABC_E9977 Neighboring gene STARR-seq mESC enhancer starr_44498 Neighboring gene STARR-positive B cell enhancer ABC_E1955 Neighboring gene STARR-seq mESC enhancer starr_44499 Neighboring gene STARR-seq mESC enhancer starr_44500 Neighboring gene STARR-seq mESC enhancer starr_44501 Neighboring gene STARR-seq mESC enhancer starr_44503 Neighboring gene predicted gene 4107 Neighboring gene symplekin pseudogene Neighboring gene STARR-seq mESC enhancer starr_44504 Neighboring gene STARR-seq mESC enhancer starr_44505 Neighboring gene predicted gene, 57821

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component  
    located_in centriolar satellite  
    located_in centriolar satellite  
    located_in cytoplasm  

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 112

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001160399.1NP_001153871.1  coiled-coil domain-containing protein 112

      See identical proteins and their annotated locations for NP_001153871.1

      Status: VALIDATED

      Source sequence(s)
      AA241279, AC124717, AC148019, AW491530, BQ831910, CJ174591, DT929545, DV656314
      Consensus CDS
      CCDS50281.1
      UniProtKB/Swiss-Prot
      A0AUP1, A0AUP2
      UniProtKB/TrEMBL
      D3Z1J2
      Related
      ENSMUSP00000072614.7, ENSMUST00000072835.7
      Conserved Domains (1) summary
      PTZ00121
      Location:339479
      PTZ00121; MAEBL; Provisional

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      46415218..46445016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011246924.4XP_011245226.1  coiled-coil domain-containing protein 112 isoform X1

      Conserved Domains (1) summary
      PTZ00121
      Location:66475
      PTZ00121; MAEBL; Provisional
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