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    rpb5 DNA-directed RNA polymerase subunit Rpb5 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541910, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rpb5
    Official Full Name
    DNA-directed RNA polymerase subunit Rpb5
    Primary source
    PomBase:SPAC23C4.15
    Locus tag
    SPOM_SPAC23C4.15
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See rpb5 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003424.3 (1054619..1055906)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SNARE protein Bet1 Neighboring gene ncRNA Neighboring gene mannosyltransferase complex subunit Alg1 Neighboring gene autophagy-associated lipase Atg15 Neighboring gene ncRNA Neighboring gene tRNA (cytosine-5-)-methyltransferase Neighboring gene BRCT domain protein Rad4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. [Molecular cloning of rpb5+, rpb7+ and rpb11+ genes of the fission yeast Schizosaccharomyces pombe: completing primary structure of all indispensable subunits of its RNA polymerase II]. Shpakovskiĭ GV, et al. Bioorg Khim, 1997 Dec. PMID 9499374
    2. Functional conservation of RNA polymerase II in fission and budding yeasts. Shpakovski GV, et al. J Mol Biol, 2000 Feb 4. PMID 10653691
    3. Molecular assembly of RNA polymerase II from the fission yeast Schizosaccharomyces pombe: subunit-subunit contact network involving Rpb5. Miyao T, et al. Genes Cells, 1996 Sep. PMID 9077438
    4. Mapping of Rpb3 and Rpb5 contact sites on two large subunits, Rpb1 and Rpb2, of the RNA polymerase II from fission yeast. Miyao T, et al. Mol Gen Genet, 1998 Jul. PMID 9738888
    5. Isolation and characterization of temperature-sensitive mutations in the gene (rpb3) for subunit 3 of RNA polymerase II in the fission yeast Schizosaccharomyces pombe. Mitobe J, et al. Mol Gen Genet, 1999 Aug. PMID 10503538

    See all (37) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    contributes_to DNA-directed 5'-3' RNA polymerase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    contributes_to RNA polymerase I activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    contributes_to RNA polymerase II activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    contributes_to RNA polymerase III activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA transcription by RNA polymerase III IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription by RNA polymerase I IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase III IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase I EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase I IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription initiation at RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase I complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of RNA polymerase I complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of RNA polymerase I complex IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    part_of RNA polymerase II, core complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of RNA polymerase II, core complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of RNA polymerase II, holoenzyme EXP
    Inferred from Experiment
    more info
    		 PubMed 
    part_of RNA polymerase III complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of RNA polymerase III complex IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase subunit Rpb5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      1054619..1055906
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018583.3 → NP_593187.1  DNA-directed RNA polymerase subunit Rpb5 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593187.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q09191
      Conserved Domains (1) summary
      cl29798
      Location:1 → 209
      RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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