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    K07A1.15 Sm domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 3565158, updated on 9-Dec-2024

    Summary

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    Official Symbol
    K07A1.15
    Official Full Name
    Sm domain-containing protein
    Primary source
    WormBase:WBGene00010619
    Locus tag
    CELE_K07A1.15
    See related
    AllianceGenome:WB:WBGene00010619
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable U7 snRNA binding activity and histone pre-mRNA DCP binding activity. Predicted to be involved in mRNA 3'-end processing by stem-loop binding activity and cleavage. Predicted to be part of cytoplasmic U snRNP body. Predicted to be active in nuclear body. Orthologous to human LSM10 (LSM10, U7 small nuclear RNA associated). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See K07A1.15 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003279.8 (9608928..9609721, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene tRNA-Ser Neighboring gene Aquaporin Neighboring gene L-type lectin-like domain-containing protein Neighboring gene ATE_N domain-containing protein;Arginyl-tRNA--protein transferase 1 Neighboring gene Large ribosomal subunit protein mL64

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables U7 snRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables histone pre-mRNA DCP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing by stem-loop binding and cleavage IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of cytoplasmic U snRNP body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nuclear body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Sm domain-containing protein
    NP_001021551.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      9608928..9609721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001026380.6 → NP_001021551.1  Sm domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001021551.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7YWY5
      Conserved Domains (1) summary
      cl00259
      Location:5 → 80
      Sm_like; Sm and related proteins
    Nucleotide Protein
    Heading Accession and Version

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