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    Tex30 testis expressed 30 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 301381, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Tex30provided by RGD
    Official Full Name
    testis expressed 30provided by RGD
    Primary source
    RGD:1309095
    See related
    EnsemblRapid:ENSRNOG00000011658 AllianceGenome:RGD:1309095
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309095
    Summary
    Orthologous to human TEX30 (testis expressed 30). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 75.7), Spleen (RPKM 37.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tex30 in Genome Data Viewer
    Location:
    9q22
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (53735512..53744672, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (46243416..46252273, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (50858737..50868238, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C14, pseudogene 2 Neighboring gene coiled-coil domain containing 168 Neighboring gene protein O-glucosyltransferase 2 Neighboring gene basic, immunoglobulin-like variable motif containing Neighboring gene ERCC excision repair 5, endonuclease

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    testis-expressed protein 30
    Names
    testis-expressed sequence 30 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001395634.1 → NP_001382563.1  testis-expressed protein 30

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A0A8I5ZZM4, A6INS1, D3ZL12
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      53735512..53744672 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039083277.2 → XP_038939205.1  testis-expressed protein 30 isoform X2

      Conserved Domains (1) summary
      cl21494
      Location:21 → 142
      Abhydrolase; alpha/beta hydrolases

    2. XM_039083279.2 → XP_038939207.1  testis-expressed protein 30 isoform X2

      Conserved Domains (1) summary
      cl21494
      Location:21 → 142
      Abhydrolase; alpha/beta hydrolases

    3. XM_039083270.2 → XP_038939198.1  testis-expressed protein 30 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZZM4, A6INS1, D3ZL12
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    4. XM_039083276.2 → XP_038939204.1  testis-expressed protein 30 isoform X2

      Conserved Domains (1) summary
      cl21494
      Location:21 → 142
      Abhydrolase; alpha/beta hydrolases

    5. XM_039083267.2 → XP_038939195.1  testis-expressed protein 30 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZZM4, A6INS1, D3ZL12
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    6. XM_039083278.2 → XP_038939206.1  testis-expressed protein 30 isoform X2

      Conserved Domains (1) summary
      cl21494
      Location:21 → 142
      Abhydrolase; alpha/beta hydrolases

    7. XM_039083269.2 → XP_038939197.1  testis-expressed protein 30 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZZM4, A6INS1, D3ZL12
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    8. XM_039083284.2 → XP_038939212.1  testis-expressed protein 30 isoform X2

      Conserved Domains (1) summary
      cl21494
      Location:21 → 142
      Abhydrolase; alpha/beta hydrolases

    9. XM_039083275.2 → XP_038939203.1  testis-expressed protein 30 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZZM4, A6INS1, D3ZL12
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    10. XM_039083272.2 → XP_038939200.1  testis-expressed protein 30 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZZM4, A6INS1, D3ZL12
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    11. XM_039083273.2 → XP_038939201.1  testis-expressed protein 30 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZZM4, A6INS1, D3ZL12
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    12. XM_039083271.1 → XP_038939199.1  testis-expressed protein 30 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZZM4, A6INS1, D3ZL12
      Related
      ENSRNOP00000085625.2, ENSRNOT00000106819.2
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    13. XM_039083282.2 → XP_038939210.1  testis-expressed protein 30 isoform X2

      Conserved Domains (1) summary
      cl21494
      Location:21 → 142
      Abhydrolase; alpha/beta hydrolases

    14. XM_039083280.2 → XP_038939208.1  testis-expressed protein 30 isoform X2

      Conserved Domains (1) summary
      cl21494
      Location:21 → 142
      Abhydrolase; alpha/beta hydrolases

    15. XM_039083274.2 → XP_038939202.1  testis-expressed protein 30 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZZM4, A6INS1, D3ZL12
      Conserved Domains (1) summary
      cl21494
      Location:32 → 219
      Abhydrolase; alpha/beta hydrolases

    16. XM_039083281.2 → XP_038939209.1  testis-expressed protein 30 isoform X2

      Conserved Domains (1) summary
      cl21494
      Location:21 → 142
      Abhydrolase; alpha/beta hydrolases

    17. XM_063266932.1 → XP_063123002.1  testis-expressed protein 30 isoform X1

      UniProtKB/TrEMBL
      A6INS1, D3ZL12
    Nucleotide Protein Strain
    Heading Accession and Version

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