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    arfip1 ADP-ribosylation factor interacting protein 1 (arfaptin 1) [ Danio rerio (zebrafish) ]

    Gene ID: 100003895, updated on 4-Jan-2025

    Summary

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    Official Symbol
    arfip1provided by ZNC
    Official Full Name
    ADP-ribosylation factor interacting protein 1 (arfaptin 1)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2690
    See related
    Ensembl:ENSDARG00000070055 AllianceGenome:ZFIN:ZDB-GENE-040426-2690
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:66341; id:ibd2077; wu:fd18g10
    Summary
    Predicted to enable protein domain specific binding activity. Is expressed in notochord. Orthologous to human ARFIP1 (ARF interacting protein 1). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See arfip1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (25441051..25486489, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (24750222..24795706, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 2a Neighboring gene FH2 domain containing 1 Neighboring gene secreted frizzled-related protein 2 Neighboring gene uncharacterized LOC101882989

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular evolution of melatonin receptor genes (mtnr) in vertebrates and its shedding light on mtnr1c. Li Y, et al. Gene, 2021 Feb 15. PMID 33164759
    2. Gene expression profiling of zebrafish embryonic retinal pigment epithelium in vivo. Leung YF, et al. Invest Ophthalmol Vis Sci, 2007 Feb. PMID 17251491, Free PMC Article
    3. A gene expression screen in zebrafish embryogenesis. Kudoh T, et al. Genome Res, 2001 Dec. PMID 11731487
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC66341, MGC174820

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    arfaptin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213368.1 → NP_998533.1  arfaptin-1

      See identical proteins and their annotated locations for NP_998533.1

      Status: PROVISIONAL

      Source sequence(s)
      BC054687
      UniProtKB/TrEMBL
      A0A2R8QMC7, F6PB95, Q7SYK6
      Related
      ENSDARP00000093278.3, ENSDART00000102501.5
      Conserved Domains (1) summary
      cd07660
      Location:121 → 321
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      25441051..25486489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005170893.4 → XP_005170950.1  arfaptin-1 isoform X3

      UniProtKB/TrEMBL
      A0A8M2BI85
      Conserved Domains (1) summary
      cd07660
      Location:155 → 355
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    2. XM_005170892.5 → XP_005170949.1  arfaptin-1 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BI53, F1Q8M3
      Related
      ENSDARP00000121937.1, ENSDART00000141892.3
      Conserved Domains (1) summary
      cd07660
      Location:228 → 428
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    3. XM_005170891.5 → XP_005170948.1  arfaptin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BI30
      Conserved Domains (1) summary
      cd07660
      Location:262 → 462
      BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394484.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      74047..114474 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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