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    si:ch211-69b7.6 si:ch211-69b7.6 [ Danio rerio (zebrafish) ]

    Gene ID: 556640, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-69b7.6provided by ZNC
    Official Full Name
    si:ch211-69b7.6provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141212-266
    See related
    AllianceGenome:ZFIN:ZDB-GENE-141212-266
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi27h03; wu:fi27h03
    Summary
    Predicted to be involved in regulation of RNA splicing. Predicted to be active in costamere and nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-69b7.6 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (11895924..11909459, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (11907958..11926602, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 93 Neighboring gene uncharacterized LOC137490405 Neighboring gene WAS/WASL interacting protein family, member 2a Neighboring gene serine/threonine-protein kinase pim-2-like Neighboring gene ATP-binding cassette, sub-family C (CFTR/MRP), member 10 Neighboring gene zgc:64002

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    neuroblast differentiation-associated protein AHNAK

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      11895924..11909459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_679489.9 → XP_684581.8  neuroblast differentiation-associated protein AHNAK

      UniProtKB/TrEMBL
      A0A8M9PFE1

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394803.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      4547..18082 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472394.2 → XP_021328069.1  neuroblast differentiation-associated protein AHNAK

      UniProtKB/TrEMBL
      A0A8M9PFE1
      Conserved Domains (1) summary
      pfam13349
      Location:405 → 562
      DUF4097; Putative adhesin

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395295.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      4547..18082 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474227.2 → XP_021329902.1  neuroblast differentiation-associated protein AHNAK

      UniProtKB/TrEMBL
      A0A8M9PFE1
      Conserved Domains (1) summary
      pfam13349
      Location:405 → 562
      DUF4097; Putative adhesin
    Nucleotide Protein Strain
    Heading Accession and Version

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