cbx3b chromobox homolog 3b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cbx3bprovided by ZNC
Official Full Name: chromobox homolog 3bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-070628-2
See related: Ensembl:ENSDARG00000092158 AllianceGenome:ZFIN:ZDB-GENE-070628-2
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj44f08; wu:fj44f08
Summary: Predicted to enable chromatin binding activity and methylated histone binding activity. Predicted to be involved in heterochromatin formation. Predicted to be located in pericentric heterochromatin. Orthologous to human CBX3 (chromobox 3). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 16

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (21038517..21047878, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (21232698..21242080, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables chromatin binding	IBA Inferred from Biological aspect of Ancestor more info
enables methylated histone binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in heterochromatin formation	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in pericentric heterochromatin	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: chromobox protein homolog 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386347.1 → NP_001373276.1 chromobox protein homolog 3b

Status: VALIDATED

Source sequence(s)

BX571678

UniProtKB/TrEMBL

A0A8N7UVS7, E9QDB7

Related

ENSDARP00000123074.1, ENSDART00000131582.3

Conserved Domains (2) summary

pfam01393
Location:136 → 188

Chromo_shadow; Chromo shadow domain

cl28914
Location:20 → 68

CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains