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    gpbp1l1 GC-rich promoter binding protein 1-like 1 [ Danio rerio (zebrafish) ]

    Gene ID: 799876, updated on 9-Dec-2024

    Summary

    Official Symbol
    gpbp1l1provided by ZNC
    Official Full Name
    GC-rich promoter binding protein 1-like 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-031118-220
    See related
    Ensembl:ENSDARG00000075569 AllianceGenome:ZFIN:ZDB-GENE-031118-220
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc48e01; fc88g04; wu:fc48e01; wu:fc88g04; wu:fi81c05
    Summary
    Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within DNA-templated transcription and positive regulation of DNA-templated transcription. Predicted to be active in nucleus. Orthologous to human GPBP1L1 (GC-rich promoter binding protein 1 like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See gpbp1l1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (33881432..33898114)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (33896720..33913271)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene microtubule associated serine/threonine kinase 2 Neighboring gene transmembrane protein 69 Neighboring gene coiled-coil domain containing 17 Neighboring gene coiled-coil domain containing 17

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding  
    enables RNA binding  
    Component Evidence Code Pubs
    is_active_in nucleus  
    located_in nucleus  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      33881432..33898114
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477183.2 → XP_021332858.1  vasculin-like protein 1

      UniProtKB/TrEMBL
      A0A0R4IH70, A0A8M9Q0P7
      Related
      ENSDARP00000134071.1, ENSDART00000165710.2
      Conserved Domains (2) summary
      pfam15337
      Location:389 → 459
      Vasculin; Vascular protein family Vasculin-like 1
      cl26464
      Location:174 → 321
      Atrophin-1; Atrophin-1 family

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395259.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      186175..202280
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001336035.9 → XP_001336071.2  vasculin-like protein 1

      UniProtKB/TrEMBL
      A0A8M1PS38
      Conserved Domains (2) summary
      pfam15337
      Location:389 → 459
      Vasculin; Vascular protein family Vasculin-like 1
      cl26464
      Location:174 → 321
      Atrophin-1; Atrophin-1 family
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