si:dkey-174m14.3 si:dkey-174m14.3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:dkey-174m14.3provided by ZNC
Official Full Name: si:dkey-174m14.3provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-8158
See related: Ensembl:ENSDARG00000043673 AllianceGenome:ZFIN:ZDB-GENE-030131-8158
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj56d07; wu:fj56d07
Summary: Predicted to enable kinase activity. Predicted to be involved in evoked excitatory postsynaptic potential. Predicted to act upstream of or within phosphorylation. Predicted to be located in membrane. Predicted to be active in synapse. Orthologous to human BEGAIN (brain enriched guanylate kinase associated). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

See si:dkey-174m14.3 in Genome Data Viewer

Location:: chromosome: 20

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (9338694..9421263)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (9367842..9433524)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables kinase activity	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within phosphorylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC563117

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001045010.1 → NP_001038475.1 uncharacterized protein LOC563117

Status: PREDICTED

Source sequence(s)

BX936423

UniProtKB/TrEMBL

A0A8M1N9S8, A0A8M2BHI1, Q5TYR3

Related

ENSDARP00000117634.1, ENSDART00000142337.2

Conserved Domains (2) summary

pfam15453
Location:361 → 603

Pilt; Protein incorporated later into Tight Junctions

pfam16043
Location:2 → 116

DUF4795; Domain of unknown function (DUF4795)