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    lsm12b LSM12 homolog b [ Danio rerio (zebrafish) ]

    Gene ID: 406422, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lsm12bprovided by ZNC
    Official Full Name
    LSM12 homolog bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2164
    See related
    Ensembl:ENSDARG00000109510 AllianceGenome:ZFIN:ZDB-GENE-040426-2164
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    lsm12; lsm12a; zgc:66039; wu:fe01f11
    Summary
    Predicted to enable RNA binding activity. Is expressed in brain and spinal cord. Orthologous to human LSM12 (LSM12 homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See lsm12b in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (3287781..3299149, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (3176141..3187509, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat-containing protein 70 Neighboring gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2b Neighboring gene transmembrane protein 101 Neighboring gene glucose-6-phosphatase catalytic subunit 3 Neighboring gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Differentially sensitive neuronal subpopulations in the central nervous system and the formation of hindbrain heterotopias in ethanol-exposed zebrafish. Buckley DM, et al. Birth Defects Res, 2019 Jul 15. PMID 30793540, Free PMC Article
    2. Localized TPC1-mediated Ca2+ release from endolysosomes contributes to myoseptal junction development in zebrafish. Rice KL, et al. J Cell Sci, 2022 May 1. PMID 35393618
    3. Adrenergic activation modulates the signal from the Reissner fiber to cerebrospinal fluid-contacting neurons during development. Cantaut-Belarif Y, et al. Elife, 2020 Oct 13. PMID 33048048, Free PMC Article
    4. Identification, expression and regulation of amphioxus G6Pase gene with an emphasis on origin of liver. Wang Y, et al. Gen Comp Endocrinol, 2015 Apr 1. PMID 25745818
    5. Loss of the Mia40a oxidoreductase leads to hepato-pancreatic insufficiency in zebrafish. Sokol AM, et al. PLoS Genet, 2018 Nov. PMID 30457989, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein LSM12 homolog A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213148.1 → NP_998313.1  protein LSM12 homolog A

      See identical proteins and their annotated locations for NP_998313.1

      Status: PROVISIONAL

      Source sequence(s)
      BC059805
      UniProtKB/Swiss-Prot
      Q6PBA2
      Related
      ENSDARP00000152353.1, ENSDART00000182032.1
      Conserved Domains (2) summary
      cd01735
      Location:8 → 68
      LSm12_N; Like-Sm protein 12, N-terminal domain
      smart00995
      Location:79 → 166
      AD; Anticodon-binding domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      3287781..3299149 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6PBA2.1 GenPept UniProtKB/Swiss-Prot:Q6PBA2

    Gene LinkOut

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