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    tcerg1b transcription elongation regulator 1b (CA150) [ Danio rerio (zebrafish) ]

    Gene ID: 797473, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tcerg1bprovided by ZNC
    Official Full Name
    transcription elongation regulator 1b (CA150)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-101026-4
    See related
    Ensembl:ENSDARG00000030665 AllianceGenome:ZFIN:ZDB-GENE-101026-4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    tcerg1
    Summary
    Predicted to enable RNA polymerase binding activity. Orthologous to human TCERG1 (transcription elongation regulator 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See tcerg1b in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (41781354..41818205, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (41768142..41805040, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene microRNA 146b-1 Neighboring gene protein phosphatase 2, regulatory subunit B, beta b Neighboring gene chaperonin containing TCP1, subunit 6A (zeta 1) Neighboring gene ring finger protein 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA polymerase binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transcription elongation regulator 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      41781354..41818205 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009295682.4 → XP_009293957.1  transcription elongation regulator 1

      UniProtKB/TrEMBL
      A0A8M3AU80
      Related
      ENSDARP00000046075.8, ENSDART00000046076.9
      Conserved Domains (5) summary
      smart00441
      Location:847 → 902
      FF; Contains two conserved F residues
      smart00456
      Location:126 → 158
      WW; Domain with 2 conserved Trp (W) residues
      cd00201
      Location:345 → 372
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
      pfam01846
      Location:621 → 668
      FF; FF domain
      pfam05537
      Location:708 → 801
      DUF759; Borrelia burgdorferi protein of unknown function (DUF759)
    Nucleotide Protein Strain
    Heading Accession and Version

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