pgp phosphoglycolate phosphatase [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: pgpprovided by ZNC
Official Full Name: phosphoglycolate phosphataseprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-6240
See related: Ensembl:ENSDARG00000029695 AllianceGenome:ZFIN:ZDB-GENE-030131-6240
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb241; sb:cb241; zgc:56011; wu:fb92c03; wu:fi40b02
Summary: Predicted to enable glycerol-3-phosphatase activity. Predicted to be active in cytoplasm. Is expressed in adaxial cell; heart; otic placode; and somite. Orthologous to human PGP (phosphoglycolate phosphatase). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 12

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	12	NC_007123.7 (18565553..18568847, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	12	NC_007123.6 (18443679..18446973, complement)

Chromosome 12 - NC_007123.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb92c03.x1 (e-PCR)
- UniSTS:187651

AW171243 (e-PCR)
- UniSTS:205841

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables glycerol-1-phosphatase activity	IEA Inferred from Electronic Annotation more info
enables glycerol-3-phosphatase activity	IBA Inferred from Biological aspect of Ancestor more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables phosphatase activity	IEA Inferred from Electronic Annotation more info
enables phosphoglycolate phosphatase activity	IEA Inferred from Electronic Annotation more info
enables protein tyrosine phosphatase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: glycerol-3-phosphate phosphatase

NP_997891.2

EC 3.1.3.18

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_212726.2 → NP_997891.2 glycerol-3-phosphate phosphatase

Status: VALIDATED

Source sequence(s)

CT009714

UniProtKB/TrEMBL

A0A8M1PI24, F1QGU0

Related

ENSDARP00000039692.6, ENSDART00000039693.7

Conserved Domains (3) summary

TIGR01452
Location:21 → 300

PGP_euk; phosphoglycolate/pyridoxal phosphate phosphatase family

pfam13242
Location:217 → 299

Hydrolase_like; HAD-hyrolase-like

pfam13344
Location:24 → 125

Hydrolase_6; Haloacid dehalogenase-like hydrolase