vstm2l V-set and transmembrane domain containing 2 like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: vstm2lprovided by ZNC
Official Full Name: V-set and transmembrane domain containing 2 likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1548
See related: Ensembl:ENSDARG00000098289 AllianceGenome:ZFIN:ZDB-GENE-040426-1548
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:66133
Summary: Acts upstream of or within regulation of amacrine cell differentiation and swimming. Predicted to be located in plasma membrane. Predicted to be active in membrane. Orthologous to human VSTM2L (V-set and transmembrane domain containing 2 like). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 6

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (2125431..2133824, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (1991792..2000144, complement)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of amacrine cell differentiation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within swimming	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: V-set and transmembrane domain-containing protein 2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200496.2 → NP_956790.2 V-set and transmembrane domain-containing protein 2-like protein precursor

Status: VALIDATED

Source sequence(s)

CU571379

UniProtKB/TrEMBL

A0A0R4ILX9, A0A8M3B050

Related

ENSDARP00000144471.1, ENSDART00000175478.2

Conserved Domains (1) summary

cl11960
Location:115 → 143

Ig; Immunoglobulin domain