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    si:ch211-119e14.1 si:ch211-119e14.1 [ Danio rerio (zebrafish) ]

    Gene ID: 560599, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-119e14.1provided by ZNC
    Official Full Name
    si:ch211-119e14.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141216-162
    See related
    Ensembl:ENSDARG00000099518 AllianceGenome:ZFIN:ZDB-GENE-141216-162
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in membrane and motile cilium. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-119e14.1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (18608536..18617163, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (18356513..18360492, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene deltex 4, E3 ubiquitin ligase a Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene coronin, actin binding protein, 1B Neighboring gene nectin cell adhesion molecule 4a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in motile cilium IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:ch211-119e14.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      18608536..18617163 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_683997.9 → XP_689089.2  uncharacterized protein si:ch211-119e14.1

      UniProtKB/TrEMBL
      A0A0R4IFY5, A0A8N7TAW9
      Related
      ENSDARP00000134165.1, ENSDART00000172419.2
    Nucleotide Protein Strain
    Heading Accession and Version

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