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    si:dkeyp-74b6.2 si:dkeyp-74b6.2 [ Danio rerio (zebrafish) ]

    Gene ID: 560359, updated on 9-Dec-2024

    Summary

    Official Symbol
    si:dkeyp-74b6.2provided by ZNC
    Official Full Name
    si:dkeyp-74b6.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-160113-86
    See related
    Ensembl:ENSDARG00000115070 AllianceGenome:ZFIN:ZDB-GENE-160113-86
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be involved in maintenance of synapse structure. Predicted to be active in glutamatergic synapse and synaptic cleft. Orthologous to human CBLN3 (cerebellin 3 precursor). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See si:dkeyp-74b6.2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (1307529..1317448)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (1152607..1159082)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene macrophage mannose receptor 1 Neighboring gene uncharacterized LOC137496112 Neighboring gene receptor-interacting serine-threonine kinase 3 Neighboring gene KH and NYN domain containing

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in maintenance of synapse structure IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in glutamatergic synapse IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in synaptic cleft IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    cerebellin-1
    Names
    cerebellin-1-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      1307529..1317448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_683765.7XP_688857.3  cerebellin-1

      UniProtKB/TrEMBL
      A0A2R8QR93, A0A8N7UV56
      Related
      ENSDARP00000157440.1, ENSDART00000189868.1
      Conserved Domains (1) summary
      cl23878
      Location:56194
      C1q; C1q domain