lye lymphocyte antigen-6, epidermis [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: lyeprovided by ZNC
Official Full Name: lymphocyte antigen-6, epidermisprovided by ZNC
Primary source: ZFIN:ZDB-GENE-120104-1
See related: AllianceGenome:ZFIN:ZDB-GENE-120104-1
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fb36d12
Summary: Is expressed in EVL; integument; olfactory placode; pectoral fin; and pharyngeal arch. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 19

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (18749603..18751612)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (17461639..17463680)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Lye exhibits a dynamic expression pattern during development, which is initially expressed in enveloping layer at gastrula stage, then expressed in epidermis at later stages. It is also expressed in olfactory placode at 24 h post-fertilization.
Title: Identification and expression of a novel member of Ly-6 superfamily in zebrafish Denio rerio.

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General gene information

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Markers

fa99b11.y1 (e-PCR)
- UniSTS:189762

fb36d12.x1 (e-PCR)
- UniSTS:203147

fc29h08.x1 (e-PCR)
- UniSTS:193467

fb36d12 (e-PCR)
- UniSTS:187111

General protein information

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Preferred Names: lymphocyte antigen-6, epidermis

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386338.1 → NP_001373267.1 lymphocyte antigen-6, epidermis precursor

Status: VALIDATED

Source sequence(s)

FP067396

UniProtKB/TrEMBL

A0A8N7TFX4

Conserved Domains (1) summary

cl10471
Location:24 → 99

LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...