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    rabepk Rab9 effector protein with kelch motifs [ Danio rerio (zebrafish) ]

    Gene ID: 431756, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rabepkprovided by ZNC
    Official Full Name
    Rab9 effector protein with kelch motifsprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040704-52
    See related
    Ensembl:ENSDARG00000112165 AllianceGenome:ZFIN:ZDB-GENE-040704-52
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:91813
    Summary
    Orthologous to human RABEPK (Rab9 effector protein with kelch motifs). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rabepk in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (2693597..2709672)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (2452664..2468790, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene myotubularin related protein 4 Neighboring gene RAB35, member RAS oncogene family a Neighboring gene guanine nucleotide binding protein (G protein), gamma 10 Neighboring gene FAST kinase domains 5 Neighboring gene heat shock protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    rab9 effector protein with kelch motifs

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002209.1 → NP_001002209.1  rab9 effector protein with kelch motifs

      See identical proteins and their annotated locations for NP_001002209.1

      Status: PROVISIONAL

      Source sequence(s)
      BC072705
      UniProtKB/Swiss-Prot
      Q6GQN7
      UniProtKB/TrEMBL
      B2GNL1
      Related
      ENSDARP00000148548.1, ENSDART00000183882.1
      Conserved Domains (3) summary
      sd00038
      Location:149 → 199
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:203 → 243
      Kelch_1; Kelch motif
      pfam13415
      Location:159 → 211
      Kelch_3; Galactose oxidase, central domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      2693597..2709672
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005171726.5 → XP_005171783.1  rab9 effector protein with kelch motifs isoform X1

      See identical proteins and their annotated locations for XP_005171783.1

      UniProtKB/Swiss-Prot
      Q6GQN7
      UniProtKB/TrEMBL
      B2GNL1
      Conserved Domains (3) summary
      sd00038
      Location:149 → 199
      Kelch; KELCH repeat [structural motif]
      pfam01344
      Location:203 → 243
      Kelch_1; Kelch motif
      pfam13415
      Location:159 → 211
      Kelch_3; Galactose oxidase, central domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6GQN7.1 GenPept UniProtKB/Swiss-Prot:Q6GQN7

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