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    rpl3 ribosomal protein L3 [ Danio rerio (zebrafish) ]

    Gene ID: 322571, updated on 9-Dec-2024

    Summary

    Official Symbol
    rpl3provided by ZNC
    Official Full Name
    ribosomal protein L3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1291
    See related
    Ensembl:ENSDARG00000003599 AllianceGenome:ZFIN:ZDB-GENE-030131-1291
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fa99g02; wu:fb65e09; zgc:110350
    Summary
    Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within exocrine pancreas development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in eye; liver; and pancreas. Used to study Shwachman-Diamond syndrome. Orthologous to human RPL3 (ribosomal protein L3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See rpl3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (29867225..29871348, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (29736383..29740506, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137490615 Neighboring gene calcium channel, voltage-dependent, gamma subunit 2a Neighboring gene small nucleolar RNA SNORA54 Neighboring gene small nucleolar RNA U83B Neighboring gene solute carrier family 25 member 39 Neighboring gene ribosomal protein L27

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Pathways from PubChem

    General gene information

    Clone Names

    • MGC110350

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding  
    enables structural constituent of ribosome  
    enables structural constituent of ribosome  
    Process Evidence Code Pubs
    acts_upstream_of_or_within exocrine pancreas development PubMed 
    involved_in translation  
    acts_upstream_of_or_within translation  
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit  
    part_of ribonucleoprotein complex  
    located_in ribosome  

    General protein information

    Preferred Names
    large ribosomal subunit protein uL3
    NP_001001590.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001590.1 → NP_001001590.1  large ribosomal subunit protein uL3

      See identical proteins and their annotated locations for NP_001001590.1

      Status: PROVISIONAL

      Source sequence(s)
      AY561514
      UniProtKB/TrEMBL
      A0A2R8Q924, Q5BJJ2, Q6Q418
      Related
      ENSDARP00000003700.7, ENSDART00000011251.10
      Conserved Domains (2) summary
      PTZ00103
      Location:1 → 400
      PTZ00103; 60S ribosomal protein L3; Provisional
      cl00324
      Location:3 → 375
      RplC; Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      29867225..29871348 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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