U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    akip1 A kinase (PRKA) interacting protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 562301, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    akip1provided by ZNC
    Official Full Name
    A kinase (PRKA) interacting protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030829-24
    See related
    Ensembl:ENSDARG00000069037 AllianceGenome:ZFIN:ZDB-GENE-030829-24
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    sb:cb752; si:dkey-8l13.1
    Summary
    Predicted to act upstream of or within regulation of non-canonical NF-kappaB signal transduction. Predicted to be active in nucleoplasm. Is expressed in brain; digestive system; heart tube; and pectoral fin musculature. Orthologous to human AKIP1 (A-kinase interacting protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See akip1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (16950724..16953977, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (16961658..16964932, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene WEE1 G2 checkpoint kinase Neighboring gene zinc finger protein 143b Neighboring gene si:dkey-8l13.5 Neighboring gene si:ch211-242e8.1 Neighboring gene P2Y purinoceptor 4-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of non-canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    A-kinase-interacting protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044983.2 → NP_001038448.1  A-kinase-interacting protein 1

      See identical proteins and their annotated locations for NP_001038448.1

      Status: PROVISIONAL

      Source sequence(s)
      BX005395
      UniProtKB/TrEMBL
      A0A8M1N9Q3, Q1L8C6
      Conserved Domains (1) summary
      cl17499
      Location:135 → 168
      Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      16950724..16953977 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159110.5 → XP_005159167.1  A-kinase-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005159167.1

      UniProtKB/TrEMBL
      A0A8M1N9Q3, Q1L8C6
      Related
      ENSDARP00000090899.4, ENSDART00000100126.5
      Conserved Domains (1) summary
      cl17499
      Location:135 → 168
      Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395017.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      655737..658357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395338.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      161469..164089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.