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    si:ch211-127m7.2 si:ch211-127m7.2 [ Danio rerio (zebrafish) ]

    Gene ID: 100001877, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-127m7.2provided by ZNC
    Official Full Name
    si:ch211-127m7.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141212-148
    See related
    Ensembl:ENSDARG00000103367 AllianceGenome:ZFIN:ZDB-GENE-141212-148
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to act upstream of or within negative regulation of double-strand break repair via nonhomologous end joining. Orthologous to human CYREN (cell cycle regulator of NHEJ). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-127m7.2 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (20729674..20730808, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (20631666..20633301, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene KxDL motif containing 1 Neighboring gene ERGIC and golgi 2 Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 2b Neighboring gene guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of double-strand break repair via nonhomologous end joining IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cell cycle regulator of non-homologous end joining

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      20729674..20730808 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001341756.8 → XP_001341792.1  cell cycle regulator of non-homologous end joining

      UniProtKB/TrEMBL
      A0A0R4IQP0, A0A8M1PSK5
      Related
      ENSDARP00000138146.1, ENSDART00000172170.3
      Conserved Domains (1) summary
      pfam15325
      Location:42 → 155
      MRI; Modulator of retrovirus infection

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395199.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      27411..28551 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473859.2 → XP_021329534.1  cell cycle regulator of non-homologous end joining

      UniProtKB/TrEMBL
      A0A8M9PXE1
      Conserved Domains (1) summary
      pfam15325
      Location:42 → 155
      MRI; Modulator of retrovirus infection
    Nucleotide Protein Strain
    Heading Accession and Version

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