U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    clec3ba C-type lectin domain family 3, member Ba [ Danio rerio (zebrafish) ]

    Gene ID: 572488, updated on 9-Dec-2024

    Summary

    Official Symbol
    clec3baprovided by ZNC
    Official Full Name
    C-type lectin domain family 3, member Baprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110411-71
    See related
    Ensembl:ENSDARG00000076541 AllianceGenome:ZFIN:ZDB-GENE-110411-71
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    clec3b; si:dkey-288i20.3
    Summary
    Predicted to be involved in bone mineralization. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in osteoarthritis and retinal macular dystrophy 4. Orthologous to human CLEC3B (C-type lectin domain family 3 member B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See clec3ba in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (2833455..2844199)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (2595794..2606533)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene transforming growth factor, beta 2 Neighboring gene acyl-CoA thioesterase 22 Neighboring gene fasciculation and elongation protein zeta 2a Neighboring gene CUB domain containing protein 1a Neighboring gene transmembrane protein 158

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    tetranectin
    Names
    C-type lectin domain family 3, member B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      2833455..2844199
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021466804.2XP_021322479.2  tetranectin

      UniProtKB/TrEMBL
      A0A8M9PDC0
      Related
      ENSDARP00000098343.2, ENSDART00000108735.3