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    si:ch211-114l13.1 si:ch211-114l13.1 [ Danio rerio (zebrafish) ]

    Gene ID: 566121, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-114l13.1provided by ZNC
    Official Full Name
    si:ch211-114l13.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070424-109
    See related
    Ensembl:ENSDARG00000093323 AllianceGenome:ZFIN:ZDB-GENE-070424-109
    Gene type
    unknown
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and urticaria. Orthologous to several human genes including NLRP12 (NLR family pyrin domain containing 12); NLRP13 (NLR family pyrin domain containing 13); and NLRP14 (NLR family pyrin domain containing 14). [provided by Alliance of Genome Resources, Dec 2024]

    Genomic context

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    See si:ch211-114l13.1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (58092579..58105221)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (57355977..57367443)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene NLR family, CARD domain containing 10 Neighboring gene si:ch211-114l13.13 Neighboring gene caspase b, like Neighboring gene si:ch211-15j1.5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Other Names

    • NOD-like receptor C

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      58092579..58105221
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_011016134.1 RNA Sequence

      Related
      ENSDART00000144190.4
    Nucleotide Protein
    Heading Accession and Version

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