pabpc1l poly(A) binding protein, cytoplasmic 1-like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: pabpc1lprovided by ZNC
Official Full Name: poly(A) binding protein, cytoplasmic 1-likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-5836
See related: Ensembl:ENSDARG00000002597 AllianceGenome:ZFIN:ZDB-GENE-030131-5836
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: pab-2; fi20g03; zgc:55855; wu:fi20g03; CH1073-323J3.1
Summary: Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Part of protein-containing complex. Orthologous to human PABPC1L (poly(A) binding protein cytoplasmic 1 like). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 8

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (45334315..45352050)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (45326432..45344179)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

AW153442 (e-PCR)
- UniSTS:205944

fi20g03.x1 (e-PCR)
- UniSTS:197006

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA 3'-UTR binding	IBA Inferred from Biological aspect of Ancestor more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables poly(A) binding	IBA Inferred from Biological aspect of Ancestor more info
enables poly(U) RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in cytoplasmic stress granule	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
part_of protein-containing complex	IPI Inferred from Physical Interaction more info	PubMed
part_of ribonucleoprotein complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: polyadenylate-binding protein 1-like

Names: poly(A) binding protein, cytoplasmic 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199839.1 → NP_956133.1 polyadenylate-binding protein 1-like

See identical proteins and their annotated locations for NP_956133.1

Status: PROVISIONAL

Source sequence(s)

BC044513

UniProtKB/TrEMBL

Q803E7

Related

ENSDARP00000110161.1, ENSDART00000126848.4

Conserved Domains (6) summary

TIGR01628
Location:11 → 610

PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

cd12378
Location:12 → 91

RRM1_I_PABPs; RNA recognition motif 1 in type I polyadenylate-binding proteins

cd12379
Location:97 → 172

RRM2_I_PABPs; RNA recognition motif 2 found in type I polyadenylate-binding proteins

cd12380
Location:190 → 269

RRM3_I_PABPs; RNA recognition motif 3 found in type I polyadenylate-binding proteins

cd12381
Location:293 → 370

RRM4_I_PABPs; RNA recognition motif 4 in type I polyadenylate-binding proteins

pfam00658
Location:542 → 609

PABP; Poly-adenylate binding protein, unique domain