U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    si:dkeyp-69b9.6 si:dkeyp-69b9.6 [ Danio rerio (zebrafish) ]

    Gene ID: 100148274, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    si:dkeyp-69b9.6provided by ZNC
    Official Full Name
    si:dkeyp-69b9.6provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-100922-227
    See related
    Ensembl:ENSDARG00000014825 AllianceGenome:ZFIN:ZDB-GENE-100922-227
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See si:dkeyp-69b9.6 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (13616239..13623908, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (13726121..13729774, complement)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene ntl-dependent gene 5 Neighboring gene D site albumin promoter binding protein b Neighboring gene protein shisa-7 Neighboring gene ubiquitin-conjugating enzyme E2S

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger protein 91

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      13616239..13623908 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021466868.2 → XP_021322543.1  zinc finger protein 91

      UniProtKB/TrEMBL
      A0A0R4IJ19, A0A8M9NZL7
      Related
      ENSDARP00000136947.1, ENSDART00000146953.3
      Conserved Domains (4) summary
      PHA00733
      Location:1342 → 1393
      PHA00733; hypothetical protein
      sd00017
      Location:882 → 902
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:500 → 522
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:895 → 918
      zf-H2C2_2; Zinc-finger double domain

    2. XM_021466867.2 → XP_021322542.1  zinc finger protein 91

      UniProtKB/TrEMBL
      A0A0R4IJ19, A0A8M9NZL7
      Related
      ENSDARP00000135742.1, ENSDART00000164344.2
      Conserved Domains (4) summary
      PHA00733
      Location:1342 → 1393
      PHA00733; hypothetical protein
      sd00017
      Location:882 → 902
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:500 → 522
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:895 → 918
      zf-H2C2_2; Zinc-finger double domain

    3. XM_021466869.2 → XP_021322544.1  zinc finger protein 91

      UniProtKB/TrEMBL
      A0A0R4IJ19, A0A8M9NZL7
      Related
      ENSDARP00000138511.1, ENSDART00000168978.2
      Conserved Domains (4) summary
      PHA00733
      Location:1342 → 1393
      PHA00733; hypothetical protein
      sd00017
      Location:882 → 902
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:500 → 522
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:895 → 918
      zf-H2C2_2; Zinc-finger double domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394957.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      167508..175178 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472965.2 → XP_021328640.1  zinc finger protein 91

      UniProtKB/TrEMBL
      A0A8M9Q5J1
      Conserved Domains (4) summary
      PHA00733
      Location:1342 → 1393
      PHA00733; hypothetical protein
      sd00017
      Location:882 → 902
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:500 → 522
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:895 → 918
      zf-H2C2_2; Zinc-finger double domain

    2. XM_021472964.2 → XP_021328639.1  zinc finger protein 91

      UniProtKB/TrEMBL
      A0A8M9Q5J1
      Conserved Domains (4) summary
      PHA00733
      Location:1342 → 1393
      PHA00733; hypothetical protein
      sd00017
      Location:882 → 902
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:500 → 522
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:895 → 918
      zf-H2C2_2; Zinc-finger double domain

    3. XM_021472966.2 → XP_021328641.1  zinc finger protein 91

      UniProtKB/TrEMBL
      A0A8M9Q5J1
      Conserved Domains (4) summary
      PHA00733
      Location:1342 → 1393
      PHA00733; hypothetical protein
      sd00017
      Location:882 → 902
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:500 → 522
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:895 → 918
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.