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    samd11 sterile alpha motif domain containing 11 [ Danio rerio (zebrafish) ]

    Gene ID: 569122, updated on 9-Dec-2024

    Summary

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    Official Symbol
    samd11provided by ZNC
    Official Full Name
    sterile alpha motif domain containing 11provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060428-2
    See related
    Ensembl:ENSDARG00000077852 AllianceGenome:ZFIN:ZDB-GENE-060428-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    samd11l
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Orthologous to human SAMD11 (sterile alpha motif domain containing 11). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See samd11 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (23020233..23123901)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (23093470..23197350)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene arginine-glutamic acid dipeptide (RE) repeats a Neighboring gene uncharacterized LOC101883493 Neighboring gene NOC2-like nucleolar associated transcriptional repressor Neighboring gene kelch-like family member 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Cloning and characterization of mr-s, a novel SAM domain protein, predominantly expressed in retinal photoreceptor cells. Inoue T, et al. BMC Dev Biol, 2006 Mar 16. PMID 16539743, Free PMC Article
    2. foxl2 and foxl3 are two ancient paralogs that remain fully functional in teleosts. Crespo B, et al. Gen Comp Endocrinol, 2013 Dec 1. PMID 24045113
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    sterile alpha motif domain-containing protein 11
    Names
    sterile alpha motif domain containing 11, like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      23020233..23123901
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009296907.4 → XP_009295182.1  sterile alpha motif domain-containing protein 11 isoform X1

      UniProtKB/TrEMBL
      A0A8M3AVF8, E7F6B2
      Related
      ENSDARP00000112558.1, ENSDART00000146463.3
      Conserved Domains (3) summary
      cd09579
      Location:734 → 801
      SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group
      smart00454
      Location:735 → 791
      SAM; Sterile alpha motif
      pfam01342
      Location:93 → 165
      SAND; SAND domain

    2. XM_009296908.4 → XP_009295183.1  sterile alpha motif domain-containing protein 11 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AMZ4
      Conserved Domains (3) summary
      smart00454
      Location:735 → 775
      SAM; Sterile alpha motif
      pfam01342
      Location:93 → 165
      SAND; SAND domain
      cl15755
      Location:734 → 785
      SAM_superfamily; SAM (Sterile alpha motif )

    3. XM_021469959.2 → XP_021325634.1  sterile alpha motif domain-containing protein 11 isoform X3

      UniProtKB/TrEMBL
      A0A8M9PL54, A0A8M9PWU9
      Related
      ENSDARP00000152637.1, ENSDART00000189843.1
      Conserved Domains (1) summary
      cd09579
      Location:575 → 642
      SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395148.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      11124..45348
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473684.2 → XP_021329359.1  sterile alpha motif domain-containing protein 11 isoform X4

      UniProtKB/TrEMBL
      A0A8M9PWU9, A0A8M9PWY4
      Conserved Domains (1) summary
      cd09579
      Location:460 → 527
      SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group

    2. XM_021473685.2 → XP_021329360.1  sterile alpha motif domain-containing protein 11 isoform X5

      UniProtKB/TrEMBL
      A0A8M9PWU9, A0A8M9Q7Z7
      Conserved Domains (1) summary
      cl15755
      Location:460 → 511
      SAM_superfamily; SAM (Sterile alpha motif )
    Nucleotide Protein Strain
    Heading Accession and Version

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