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    PCNP PEST proteolytic signal containing nuclear protein [ Bos taurus (domestic cattle) ]

    Gene ID: 615197, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PCNPprovided by VGNC
    Official Full Name
    PEST proteolytic signal containing nuclear proteinprovided by VGNC
    Primary source
    VGNC:VGNC:32636
    See related
    BGD:BT30238; Ensembl:ENSBTAG00000015069
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PCNP in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (46002022..46016857)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene SUMO specific peptidase 7 Neighboring gene putative protein FAM172B Neighboring gene tRNA methyltransferase 10C, mitochondrial RNase P subunit Neighboring gene zinc finger and BTB domain containing 11 Neighboring gene ribosomal protein L24

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC128940

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PEST proteolytic signal-containing nuclear protein
    Names
    PEST-containing nuclear protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038205.1 → NP_001033294.1  PEST proteolytic signal-containing nuclear protein

      See identical proteins and their annotated locations for NP_001033294.1

      Status: PROVISIONAL

      Source sequence(s)
      BC108137
      UniProtKB/Swiss-Prot
      Q32PF3
      Related
      ENSBTAP00000017901.5, ENSBTAT00000017901.6
      Conserved Domains (1) summary
      pfam15473
      Location:24 → 171
      PCNP; PEST, proteolytic signal-containing nuclear protein family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      46002022..46016857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024991968.2 → XP_024847736.1  PEST proteolytic signal-containing nuclear protein isoform X1

      Conserved Domains (1) summary
      pfam15473
      Location:20 → 151
      PCNP; PEST, proteolytic signal-containing nuclear protein family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q32PF3.1 GenPept UniProtKB/Swiss-Prot:Q32PF3

    Gene LinkOut

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