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    TLCD3A TLC domain containing 3A [ Bos taurus (domestic cattle) ]

    Gene ID: 508425, updated on 27-Dec-2024

    Summary

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    Official Symbol
    TLCD3Aprovided by VGNC
    Official Full Name
    TLC domain containing 3Aprovided by VGNC
    Primary source
    VGNC:VGNC:28822
    See related
    Ensembl:ENSBTAG00000046273
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    FAM57A
    Orthologs
    human mouse all
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    Genomic context

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    See TLCD3A in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (22097875..22125748, complement)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-2335 Neighboring gene glyoxalase domain containing 4 Neighboring gene gem nuclear organelle associated protein 4 Neighboring gene endozepine-like peptide 2 Neighboring gene VPS53 subunit of GARP complex Neighboring gene microRNA mir-2336

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TLC domain-containing protein 3A
    Names
    family with sequence similarity 57 member A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081516.1 → NP_001074985.1  TLC domain-containing protein 3A

      See identical proteins and their annotated locations for NP_001074985.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133377
      UniProtKB/TrEMBL
      A0AAA9T7K5, A2VDS3
      Related
      ENSBTAP00000056027.1, ENSBTAT00000063495.2
      Conserved Domains (1) summary
      smart00724
      Location:33 → 250
      TLC; TRAM, LAG1 and CLN8 homology domains

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      22097875..22125748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024979859.2 → XP_024835627.1  TLC domain-containing protein 3A isoform X2

      UniProtKB/TrEMBL
      A0AAA9SSA8
      Related
      ENSBTAP00000086863.1, ENSBTAT00000103708.1
      Conserved Domains (1) summary
      smart00724
      Location:26 → 219
      TLC; TRAM, LAG1 and CLN8 homology domains

    2. XM_059877871.1 → XP_059733854.1  TLC domain-containing protein 3A isoform X3

      UniProtKB/TrEMBL
      A0AAA9T6T0
      Related
      ENSBTAP00000092293.1, ENSBTAT00000127160.1

    3. XM_024979858.2 → XP_024835626.1  TLC domain-containing protein 3A isoform X1

      UniProtKB/TrEMBL
      A0AAA9T7K5
      Conserved Domains (1) summary
      smart00724
      Location:38 → 222
      TLC; TRAM, LAG1 and CLN8 homology domains

    4. XM_024979861.2 → XP_024835629.1  TLC domain-containing protein 3A isoform X4

      UniProtKB/TrEMBL
      A0AAA9SLA3
    Nucleotide Protein Strain
    Heading Accession and Version

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