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    CNOT10 CCR4-NOT transcription complex subunit 10 [ Bos taurus (domestic cattle) ]

    Gene ID: 540938, updated on 30-Jan-2025

    Summary

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    Official Symbol
    CNOT10provided by VGNC
    Official Full Name
    CCR4-NOT transcription complex subunit 10provided by VGNC
    Primary source
    VGNC:VGNC:27515
    See related
    BGD:BT22653; EnsemblRapid:ENSBTAG00070020528
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CNOT10 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (7113428..7171782)

    Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene dynein cytoplasmic 1 light intermediate chain 1 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene tripartite motif containing 71 Neighboring gene uncharacterized LOC100847917

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC139097

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CCR4-NOT transcription complex subunit 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083755.1 → NP_001077224.1  CCR4-NOT transcription complex subunit 10

      See identical proteins and their annotated locations for NP_001077224.1

      Status: PROVISIONAL

      Source sequence(s)
      BC134501
      UniProtKB/Swiss-Prot
      A4IFB6
      UniProtKB/TrEMBL
      A0AAA9TJP6
      Related
      ENSBTAP00070027801.1, ENSBTAT00070046350.1
      Conserved Domains (2) summary
      COG0457
      Location:86 → 274
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:296 → 321
      TPR; TPR repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      7113428..7171782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015459454.2 → XP_015314940.1  CCR4-NOT transcription complex subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MYN1, A0AAA9TJP6
      Related
      ENSBTAP00070027795.1, ENSBTAT00070046332.1
      Conserved Domains (2) summary
      COG0457
      Location:146 → 334
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:356 → 381
      TPR; TPR repeat [structural motif]

    2. XM_024982949.2 → XP_024838717.2  CCR4-NOT transcription complex subunit 10 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TJP6
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A4IFB6.1 GenPept UniProtKB/Swiss-Prot:A4IFB6

    Gene LinkOut

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