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    GDAP1L1 ganglioside induced differentiation associated protein 1 like 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 541158, updated on 30-Jan-2025

    Summary

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    Official Symbol
    GDAP1L1provided by VGNC
    Official Full Name
    ganglioside induced differentiation associated protein 1 like 1provided by VGNC
    Primary source
    VGNC:VGNC:29296
    See related
    BGD:BT17991; EnsemblRapid:ENSBTAG00070019717
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See GDAP1L1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (72715815..72740119)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene junctophilin 2 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene oxidative stress responsive serine rich 1 Neighboring gene fat storage inducing transmembrane protein 2 Neighboring gene R3H domain containing like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ganglioside-induced differentiation-associated protein 1-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001435159.1 → NP_001422088.1  ganglioside-induced differentiation-associated protein 1-like 1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000013
      Related
      ENSBTAP00070026790.1, ENSBTAT00070044529.1

    RNA

    1. NR_198906.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      NKLS02000013

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      72715815..72740119
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010811522.4 → XP_010809824.1  ganglioside-induced differentiation-associated protein 1-like 1 isoform X1

      See identical proteins and their annotated locations for XP_010809824.1

      Conserved Domains (2) summary
      cd03052
      Location:47 → 119
      GST_N_GDAP1; GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have ...
      cl02776
      Location:201 → 317
      GST_C_family; C-terminal, alpha helical domain of the Glutathione S-transferase family

    2. XM_010811523.4 → XP_010809825.1  ganglioside-induced differentiation-associated protein 1-like 1 isoform X1

      See identical proteins and their annotated locations for XP_010809825.1

      Conserved Domains (2) summary
      cd03052
      Location:47 → 119
      GST_N_GDAP1; GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have ...
      cl02776
      Location:201 → 317
      GST_C_family; C-terminal, alpha helical domain of the Glutathione S-transferase family
    Nucleotide Protein Strain
    Heading Accession and Version

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