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    ARRDC1 arrestin domain containing 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 786098, updated on 27-Dec-2024

    Summary

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    Official Symbol
    ARRDC1provided by VGNC
    Official Full Name
    arrestin domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:26171
    See related
    BGD:BT25583; Ensembl:ENSBTAG00000012147
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ARRDC1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (106567605..106575152)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L41 Neighboring gene diphthamide biosynthesis 7 Neighboring gene zinc finger MYND-type containing 19 Neighboring gene euchromatic histone lysine methyltransferase 1 Neighboring gene calcium voltage-gated channel subunit alpha1 B Neighboring gene uncharacterized LOC132346655

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC142598

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-like ligase-substrate adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arrestin domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080365.2 → NP_001073834.1  arrestin domain-containing protein 1

      See identical proteins and their annotated locations for NP_001073834.1

      Status: PROVISIONAL

      Source sequence(s)
      BC120279
      UniProtKB/TrEMBL
      A0A3Q1MJY5, A0A3Q1MQ92, F1MK49, Q0P5B0
      Related
      ENSBTAP00000074159.2, ENSBTAT00000077315.2
      Conserved Domains (2) summary
      pfam02752
      Location:162 → 284
      Arrestin_C; Arrestin (or S-antigen), C-terminal domain
      cl22903
      Location:7 → 139
      Arrestin_N; Arrestin (or S-antigen), N-terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      106567605..106575152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024999258.2 → XP_024855026.1  arrestin domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MJY5
      Conserved Domains (2) summary
      pfam02752
      Location:168 → 290
      Arrestin_C; Arrestin (or S-antigen), C-terminal domain
      cl22903
      Location:7 → 145
      Arrestin_N; Arrestin (or S-antigen), N-terminal domain

    2. XM_024999257.2 → XP_024855025.1  arrestin domain-containing protein 1 isoform X1

      Conserved Domains (2) summary
      pfam02752
      Location:236 → 358
      Arrestin_C; Arrestin (or S-antigen), C-terminal domain
      cl22903
      Location:108 → 213
      Arrestin_N; Arrestin (or S-antigen), N-terminal domain

    3. XM_010810577.4 → XP_010808879.1  arrestin domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0AAA9SM51
      Related
      ENSBTAP00000084967.1, ENSBTAT00000110426.1
      Conserved Domains (2) summary
      pfam02752
      Location:230 → 351
      Arrestin_C; Arrestin (or S-antigen), C-terminal domain
      cl22903
      Location:118 → 207
      Arrestin_N; Arrestin (or S-antigen), N-terminal domain

    4. XM_024999260.2 → XP_024855028.1  arrestin domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0AAA9S3T7
      Related
      ENSBTAP00000080600.1, ENSBTAT00000104038.1
      Conserved Domains (2) summary
      pfam02752
      Location:151 → 273
      Arrestin_C; Arrestin (or S-antigen), C-terminal domain
      cl22903
      Location:22 → 128
      Arrestin_N; Arrestin (or S-antigen), N-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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