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    SCYL1 SCY1 like pseudokinase 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 515247, updated on 30-Jan-2025

    Summary

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    Official Symbol
    SCYL1provided by VGNC
    Official Full Name
    SCY1 like pseudokinase 1provided by VGNC
    Primary source
    VGNC:VGNC:34374
    See related
    BGD:BT29230; EnsemblRapid:ENSBTAG00070034777
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SCYL1 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (43704526..43715562)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112444863 Neighboring gene uncharacterized LOC101903949 Neighboring gene latent transforming growth factor beta binding protein 3 Neighboring gene family with sequence similarity 89 member B Neighboring gene zinc ribbon domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC165975

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    N-terminal kinase-like protein
    Names
    SCY1-like 1
    SCY1-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102021.2 → NP_001095491.1  N-terminal kinase-like protein

      See identical proteins and their annotated locations for NP_001095491.1

      Status: PROVISIONAL

      Source sequence(s)
      BC147968
      UniProtKB/Swiss-Prot
      A6QLH6
      Related
      ENSBTAP00070047658.1, ENSBTAT00070078125.1
      Conserved Domains (3) summary
      smart00220
      Location:32 → 259
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14011
      Location:29 → 296
      PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
      sd00044
      Location:351 → 372
      HEAT; HEAT repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      43704526..43715562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059882918.1 → XP_059738901.1  N-terminal kinase-like protein isoform X1

    2. XM_059882919.1 → XP_059738902.1  N-terminal kinase-like protein isoform X2

    3. XM_005227078.4 → XP_005227135.1  N-terminal kinase-like protein isoform X3

      Conserved Domains (2) summary
      cd14011
      Location:29 → 296
      PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
      sd00044
      Location:351 → 372
      HEAT; HEAT repeat [structural motif]

    4. XM_015461270.3 → XP_015316756.1  N-terminal kinase-like protein isoform X4

      Conserved Domains (2) summary
      cd14011
      Location:29 → 296
      PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
      sd00044
      Location:351 → 372
      HEAT; HEAT repeat [structural motif]

    RNA

    1. XR_009493310.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QLH6.1 GenPept UniProtKB/Swiss-Prot:A6QLH6

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