U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ATG4C autophagy related 4C cysteine peptidase [ Bos taurus (domestic cattle) ]

    Gene ID: 531455, updated on 28-Dec-2024

    Summary

    Official Symbol
    ATG4Cprovided by VGNC
    Official Full Name
    autophagy related 4C cysteine peptidaseprovided by VGNC
    Primary source
    VGNC:VGNC:26259
    See related
    BGD:BT20655; Ensembl:ENSBTAG00000010124
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See ATG4C in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (82756137..82852309, complement)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132344898 Neighboring gene uncharacterized LOC132345011 Neighboring gene U6 spliceosomal RNA Neighboring gene large ribosomal subunit protein uL14-like Neighboring gene dedicator of cytokinesis 7 Neighboring gene angiopoietin like 3

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Expression

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    General protein information

    Preferred Names
    cysteine protease ATG4C
    Names
    APG4 autophagy 4 homolog C
    ATG4 autophagy related 4 homolog C
    NP_001075911.1
    XP_005204569.2
    XP_005204570.2
    XP_005204571.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082442.1NP_001075911.1  cysteine protease ATG4C

      See identical proteins and their annotated locations for NP_001075911.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133598
      UniProtKB/TrEMBL
      A0A3Q1MMF7, A2VE68
      Related
      ENSBTAP00000013356.6, ENSBTAT00000013356.6
      Conserved Domains (1) summary
      pfam03416
      Location:77394
      Peptidase_C54; Peptidase family C54

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      82756137..82852309 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005204512.5XP_005204569.2  cysteine protease ATG4C isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MMF7, F1MJ23
      Related
      ENSBTAP00000065402.2, ENSBTAT00000074273.2
      Conserved Domains (1) summary
      pfam03416
      Location:77394
      Peptidase_C54; Peptidase family C54
    2. XM_005204513.5XP_005204570.2  cysteine protease ATG4C isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MMF7, F1MJ23
      Conserved Domains (1) summary
      pfam03416
      Location:77394
      Peptidase_C54; Peptidase family C54
    3. XM_005204514.5XP_005204571.2  cysteine protease ATG4C isoform X2

      UniProtKB/TrEMBL
      A0A3Q1M634, A0AAA9TNZ1
      Related
      ENSBTAP00000100085.1, ENSBTAT00000123191.1
      Conserved Domains (1) summary
      pfam03416
      Location:33350
      Peptidase_C54; Peptidase family C54