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    AP5M1 adaptor related protein complex 5 subunit mu 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 539663, updated on 27-Dec-2024

    Summary

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    Official Symbol
    AP5M1provided by VGNC
    Official Full Name
    adaptor related protein complex 5 subunit mu 1provided by VGNC
    Primary source
    VGNC:VGNC:25996
    See related
    BGD:BT19539; Ensembl:ENSBTAG00000013043
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    Mu5; MUDENG; C14orf108
    Orthologs
    human mouse all
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    Genomic context

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    See AP5M1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 10 NC_037337.1 (69671232..69696374)

    Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene tubulin alpha-1A chain-like Neighboring gene exocyst complex component 5 Neighboring gene small nucleolar RNA SNORA72 Neighboring gene WAS/WASL-interacting protein family member 3-like Neighboring gene transfer RNA cysteine (anticodon ACA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-type membrane coat adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-5 complex subunit mu-1
    Names
    MHD domain-containing death-inducing protein
    MU-2/AP1M2 domain containing, death-inducing
    Mu-2 related death-inducing protein
    adapter-related protein complex 5 mu subunit
    adapter-related protein complex 5 subunit mu-1
    adaptor related protein complex 5 mu 1 subunit
    mu-2-related death-inducing protein
    muD

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015670.1 → NP_001015670.1  AP-5 complex subunit mu-1

      See identical proteins and their annotated locations for NP_001015670.1

      Status: PROVISIONAL

      Source sequence(s)
      BT020795
      UniProtKB/Swiss-Prot
      Q5E9X5
      UniProtKB/TrEMBL
      A0AAA9TNW9
      Related
      ENSBTAP00000017337.3, ENSBTAT00000017337.4
      Conserved Domains (1) summary
      cd09256
      Location:196 → 482
      AP_MuD_MHD; Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      69671232..69696374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010809366.4 → XP_010807668.1  AP-5 complex subunit mu-1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TNW9, A0AAA9TZT3
      Related
      ENSBTAP00000103846.1, ENSBTAT00000088480.1
      Conserved Domains (1) summary
      cd09256
      Location:196 → 482
      AP_MuD_MHD; Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG)

    2. XM_010809367.4 → XP_010807669.1  AP-5 complex subunit mu-1 isoform X2

      UniProtKB/TrEMBL
      A0AAA9TFU5
      Conserved Domains (1) summary
      cd09256
      Location:196 → 431
      AP_MuD_MHD; Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG)

    RNA

    1. XR_809327.4 RNA Sequence

    2. XR_003036668.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5E9X5.1 GenPept UniProtKB/Swiss-Prot:Q5E9X5

    Gene LinkOut

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    Research Materials