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    TRPM3 transient receptor potential cation channel subfamily M member 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 540699, updated on 1-Jan-2025

    Summary

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    Official Symbol
    TRPM3provided by VGNC
    Official Full Name
    transient receptor potential cation channel subfamily M member 3provided by VGNC
    Primary source
    VGNC:VGNC:55085
    See related
    BGD:BT21170; Ensembl:ENSBTAG00000007778
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human all
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    Genomic context

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    See TRPM3 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (46711168..47318510, complement)

    Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132345957 Neighboring gene microRNA mir-2285i Neighboring gene uncharacterized LOC112447801 Neighboring gene histone-binding protein RBBP4-like Neighboring gene microRNA mir-204 Neighboring gene beclin-1-like Neighboring gene phosphoglycerate mutase 1-like Neighboring gene cell migration inducing hyaluronidase 2 Neighboring gene abhydrolase domain containing 17B, depalmitoylase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables monoatomic cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in metal ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic cation transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein tetramerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transient receptor potential cation channel subfamily M member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076236.2 → NP_001069704.2  transient receptor potential cation channel subfamily M member 3

      Status: VALIDATED

      Source sequence(s)
      NKLS02000008
      UniProtKB/TrEMBL
      A0AAA9S1Q0, A0AAA9TC89
      Related
      ENSBTAP00000077234.1, ENSBTAT00000094834.1
      Conserved Domains (3) summary
      TIGR00870
      Location:906 → 1224
      trp; transient-receptor-potential calcium channel protein
      pfam16519
      Location:1252 → 1307
      TRPM_tetra; Tetramerisation domain of TRPM
      pfam18139
      Location:153 → 443
      LSDAT_euk; SLOG in TRPM

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      46711168..47318510 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059889200.1 → XP_059745183.1  transient receptor potential cation channel subfamily M member 3 isoform X4

      UniProtKB/TrEMBL
      A0AAA9U207, F1MQI6
      Related
      ENSBTAP00000103960.1, ENSBTAT00000095042.1

    2. XM_059889199.1 → XP_059745182.1  transient receptor potential cation channel subfamily M member 3 isoform X3

      UniProtKB/TrEMBL
      F1MQI6
      Related
      ENSBTAP00000053318.4, ENSBTAT00000061517.4

    3. XM_059889198.1 → XP_059745181.1  transient receptor potential cation channel subfamily M member 3 isoform X2

      UniProtKB/TrEMBL
      A0AAA9SPP2

    4. XM_059889197.1 → XP_059745180.1  transient receptor potential cation channel subfamily M member 3 isoform X1

      UniProtKB/TrEMBL
      F1MQI6

    5. XM_059889204.1 → XP_059745187.1  transient receptor potential cation channel subfamily M member 3 isoform X7

      UniProtKB/TrEMBL
      A0AAA9TC89

    6. XM_059889203.1 → XP_059745186.1  transient receptor potential cation channel subfamily M member 3 isoform X6

      UniProtKB/TrEMBL
      A0AAA9SPP2
      Related
      ENSBTAP00000087330.1, ENSBTAT00000101004.1

    7. XM_059889202.1 → XP_059745185.1  transient receptor potential cation channel subfamily M member 3 isoform X6

      UniProtKB/TrEMBL
      A0AAA9SPP2

    8. XM_059889201.1 → XP_059745184.1  transient receptor potential cation channel subfamily M member 3 isoform X5

      UniProtKB/TrEMBL
      A0AAA9SPP2
    Nucleotide Protein Strain
    Heading Accession and Version

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