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    AP1S2 adaptor related protein complex 1 subunit sigma 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 616331, updated on 30-Jan-2025

    Summary

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    Official Symbol
    AP1S2provided by VGNC
    Official Full Name
    adaptor related protein complex 1 subunit sigma 2provided by VGNC
    Primary source
    VGNC:VGNC:50199
    See related
    BGD:BT25654; EnsemblRapid:ENSBTAG00070027084
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    AP1S1
    Orthologs
    human mouse all
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    Genomic context

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    See AP1S2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (127668115..127695270)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene gastrin releasing peptide receptor Neighboring gene uncharacterized LOC104970610 Neighboring gene uncharacterized LOC101904527 Neighboring gene zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 Neighboring gene carbonic anhydrase 5B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC128457

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-1 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-1 complex subunit sigma-2
    Names
    adapter-related protein complex 1 sigma-1B subunit
    adapter-related protein complex 1 subunit sigma-1B
    adaptor protein complex AP-1 sigma-1B subunit
    adaptor protein complex AP-1 subunit sigma-1B
    adaptor related protein complex 1 sigma 2 subunit
    adaptor-related protein complex 1 subunit sigma-1B
    adaptor-related protein complex 1, sigma 1 subunit
    clathrin assembly protein complex 1 sigma-1B small chain
    golgi adaptor HA1/AP1 adaptin sigma-1B subunit
    sigma 1B subunit of AP-1 clathrin
    sigma-adaptin 1B
    sigma1B-adaptin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040591.2 → NP_001035681.1  AP-1 complex subunit sigma-2

      See identical proteins and their annotated locations for NP_001035681.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103139
      UniProtKB/Swiss-Prot
      Q3ZBS3
      UniProtKB/TrEMBL
      A0A3Q1MLF5
      Related
      ENSBTAP00070036718.1, ENSBTAT00070061694.1
      Conserved Domains (1) summary
      cd14831
      Location:2 → 144
      AP1_sigma; AP-1 complex subunit sigma

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      127668115..127695270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005228451.4 → XP_005228508.1  AP-1 complex subunit sigma-2 isoform X1

      See identical proteins and their annotated locations for XP_005228508.1

      UniProtKB/TrEMBL
      A0A3Q1MLF5, A0AAA9STM1
      Related
      ENSBTAP00070036702.1, ENSBTAT00070061670.1
      Conserved Domains (1) summary
      cd14831
      Location:2 → 144
      AP1_sigma; AP-1 complex subunit sigma

    2. XM_059883548.1 → XP_059739531.1  AP-1 complex subunit sigma-2 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MBU7, A0A3Q1MLF5
      Related
      ENSBTAP00070036687.1, ENSBTAT00070061647.1

    3. XM_005228452.5 → XP_005228509.1  AP-1 complex subunit sigma-2 isoform X3

      See identical proteins and their annotated locations for XP_005228509.1

      UniProtKB/TrEMBL
      A0A3Q1MLF5, A0AAA9TIN4
      Related
      ENSBTAP00070036677.1, ENSBTAT00070061635.1
      Conserved Domains (1) summary
      cd14831
      Location:2 → 142
      AP1_sigma; AP-1 complex subunit sigma

    4. XM_059883547.1 → XP_059739530.1  AP-1 complex subunit sigma-2 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MBU7, A0A3Q1MLF5

    5. XM_005228453.4 → XP_005228510.1  AP-1 complex subunit sigma-2 isoform X4

      See identical proteins and their annotated locations for XP_005228510.1

      UniProtKB/TrEMBL
      A0A3Q1MLF5
      Related
      ENSBTAP00070036668.1, ENSBTAT00070061623.1
      Conserved Domains (1) summary
      cd14831
      Location:2 → 142
      AP1_sigma; AP-1 complex subunit sigma
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3ZBS3.1 GenPept UniProtKB/Swiss-Prot:Q3ZBS3

    Gene LinkOut

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