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    CRAT carnitine O-acetyltransferase [ Bos taurus (domestic cattle) ]

    Gene ID: 512902, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CRATprovided by VGNC
    Official Full Name
    carnitine O-acetyltransferaseprovided by VGNC
    Primary source
    VGNC:VGNC:27687
    See related
    BGD:BT24883; Ensembl:ENSBTAG00000001932
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CRAT in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (99557886..99572506, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene craniofacial development protein 2-like Neighboring gene dolichyldiphosphatase 1 Neighboring gene protein phosphatase 2 phosphatase activator Neighboring gene microRNA mir-12056 Neighboring gene immediate early response 5 like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC142781

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carnitine O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carnitine metabolic process, CoA-linked IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carnitine O-acetyltransferase
    Names
    carnitine acetyltransferase
    NP_001069055.1
    XP_024854292.1
    XP_024854293.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075587.1 → NP_001069055.1  carnitine O-acetyltransferase

      See identical proteins and their annotated locations for NP_001069055.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123649
      UniProtKB/TrEMBL
      A0A3Q1M201, Q08DN5
      Related
      ENSBTAP00000063784.2, ENSBTAT00000072616.2
      Conserved Domains (1) summary
      pfam00755
      Location:35 → 615
      Carn_acyltransf; Choline/Carnitine o-acyltransferase

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      99557886..99572506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024998525.2 → XP_024854293.1  carnitine O-acetyltransferase isoform X2

      UniProtKB/TrEMBL
      A0A3Q1M201
      Conserved Domains (1) summary
      pfam00755
      Location:10 → 523
      Carn_acyltransf; Choline/Carnitine o-acyltransferase

    2. XM_024998524.2 → XP_024854292.1  carnitine O-acetyltransferase isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LYY4, A0A3Q1M387
      Related
      ENSBTAP00000060872.1, ENSBTAT00000079641.2
      Conserved Domains (1) summary
      pfam00755
      Location:35 → 611
      Carn_acyltransf; Choline/Carnitine o-acyltransferase
    Nucleotide Protein Strain
    Heading Accession and Version

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