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    GLB1L galactosidase beta 1 like [ Bos taurus (domestic cattle) ]

    Gene ID: 532551, updated on 28-Dec-2024

    Summary

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    Official Symbol
    GLB1Lprovided by VGNC
    Official Full Name
    galactosidase beta 1 likeprovided by VGNC
    Primary source
    VGNC:VGNC:29392
    See related
    BGD:BT14530; Ensembl:ENSBTAG00000020611
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See GLB1L in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (107186405..107194793, complement)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily B member 6 Neighboring gene autophagy related 9A Neighboring gene ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 Neighboring gene serine/threonine kinase 16 Neighboring gene tubulin alpha 4a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-galactosidase-1-like protein
    NP_001192931.1
    XP_005202909.1
    XP_059731105.1
    XP_059731106.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206002.2 → NP_001192931.1  beta-galactosidase-1-like protein precursor

      See identical proteins and their annotated locations for NP_001192931.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000002
      UniProtKB/TrEMBL
      A0AAA9SUR3, E1BCP9
      Related
      ENSBTAP00000027467.4, ENSBTAT00000027467.6
      Conserved Domains (2) summary
      pfam01301
      Location:37 → 352
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam13364
      Location:536 → 604
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      107186405..107194793 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059875123.1 → XP_059731106.1  beta-galactosidase-1-like protein isoform X3

    2. XM_059875122.1 → XP_059731105.1  beta-galactosidase-1-like protein isoform X2

      UniProtKB/TrEMBL
      A0AAA9SUR3

    3. XM_005202852.5 → XP_005202909.1  beta-galactosidase-1-like protein isoform X1

      UniProtKB/TrEMBL
      A0AAA9SUR3
      Conserved Domains (2) summary
      pfam01301
      Location:27 → 299
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam13364
      Location:483 → 551
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain
    Nucleotide Protein Strain
    Heading Accession and Version

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