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    LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [ Bos taurus (domestic cattle) ]

    Gene ID: 613634, updated on 30-Jan-2025

    Summary

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    Official Symbol
    LSM4provided by VGNC
    Official Full Name
    LSM4 homolog, U6 small nuclear RNA and mRNA degradation associatedprovided by VGNC
    Primary source
    VGNC:VGNC:31056
    See related
    BGD:BT16889; EnsemblRapid:ENSBTAG00070006918
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See LSM4 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (4881009..4893677)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene pyroglutamyl-peptidase I Neighboring gene coiled-coil-helix-coiled-coil-helix domain-containing protein 2-like Neighboring gene U6 spliceosomal RNA Neighboring gene histone H3.3A-like Neighboring gene uncharacterized LOC101902444 Neighboring gene JunD proto-oncogene, AP-1 transcription factor subunit Neighboring gene IQ motif containing N Neighboring gene colon, intestine and stomach enriched 1 Neighboring gene uncharacterized LOC618787

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128718

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U6 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in P-body assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear-transcribed mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA-associated Sm-like protein LSm4
    Names
    LSM4 homolog, U6 small nuclear RNA associated

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035436.2 → NP_001030513.1  U6 snRNA-associated Sm-like protein LSm4

      See identical proteins and their annotated locations for NP_001030513.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103243
      UniProtKB/Swiss-Prot
      Q3ZBK6
      Related
      ENSBTAP00070008940.1, ENSBTAT00070015700.1
      Conserved Domains (1) summary
      cd01723
      Location:2 → 77
      LSm4; Like-Sm protein 4

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      4881009..4893677
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3ZBK6.1 GenPept UniProtKB/Swiss-Prot:Q3ZBK6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.