U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PIGT phosphatidylinositol glycan anchor biosynthesis class T [ Bos taurus (domestic cattle) ]

    Gene ID: 504724, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PIGTprovided by VGNC
    Official Full Name
    phosphatidylinositol glycan anchor biosynthesis class Tprovided by VGNC
    Primary source
    VGNC:VGNC:32878
    See related
    BGD:BT30374; Ensembl:ENSBTAG00000016122
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PIGT in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (73747846..73765086)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene SYS1 golgi trafficking protein Neighboring gene TP53 target 5 Neighboring gene dysbindin domain containing 2 Neighboring gene serine peptidase inhibitor, Kunitz type 3 Neighboring gene WW domain binding protein 11 pseudogene Neighboring gene uncharacterized LOC100196900

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in attachment of GPI anchor to protein IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of GPI-anchor transamidase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    GPI transamidase component PIG-T

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192996.2 → NP_001179925.1  GPI transamidase component PIG-T precursor

      See identical proteins and their annotated locations for NP_001179925.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000013
      Conserved Domains (1) summary
      pfam04113
      Location:32 → 565
      Gpi16; Gpi16 subunit, GPI transamidase component

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      73747846..73765086
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005214534.5 → XP_005214591.1  GPI transamidase component PIG-T isoform X1

      See identical proteins and their annotated locations for XP_005214591.1

      UniProtKB/TrEMBL
      F1N4W0
      Conserved Domains (1) summary
      pfam04113
      Location:32 → 566
      Gpi16; Gpi16 subunit, GPI transamidase component

    2. XM_025000363.2 → XP_024856131.1  GPI transamidase component PIG-T isoform X2

      Conserved Domains (1) summary
      pfam04113
      Location:32 → 565
      Gpi16; Gpi16 subunit, GPI transamidase component

    3. XM_005214532.5 → XP_005214589.1  GPI transamidase component PIG-T isoform X1

      See identical proteins and their annotated locations for XP_005214589.1

      UniProtKB/TrEMBL
      F1N4W0
      Related
      ENSBTAP00000021457.6, ENSBTAT00000021457.7
      Conserved Domains (1) summary
      pfam04113
      Location:32 → 566
      Gpi16; Gpi16 subunit, GPI transamidase component
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.