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    SEC22C SEC22 homolog C, vesicle trafficking protein [ Bos taurus (domestic cattle) ]

    Gene ID: 614905, updated on 1-Jan-2025

    Summary

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    Official Symbol
    SEC22Cprovided by VGNC
    Official Full Name
    SEC22 homolog C, vesicle trafficking proteinprovided by VGNC
    Primary source
    VGNC:VGNC:34409
    See related
    BGD:BT13115; Ensembl:ENSBTAG00000006570
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SEC22C in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (14697239..14724110, complement)

    Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene lysozyme like 4 Neighboring gene vasoactive intestinal peptide receptor 1 Neighboring gene uncharacterized LOC132343485 Neighboring gene SS18 like 2 Neighboring gene natural killer cell triggering receptor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC134135

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vesicle-trafficking protein SEC22c
    Names
    SEC22 vesicle trafficking protein homolog C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046546.2 → NP_001040011.1  vesicle-trafficking protein SEC22c

      Status: PROVISIONAL

      Source sequence(s)
      BC110195
      UniProtKB/Swiss-Prot
      Q2YDJ2
      UniProtKB/TrEMBL
      A0A3Q1MF73
      Related
      ENSBTAP00000008631.5, ENSBTAT00000008631.6
      Conserved Domains (1) summary
      pfam13774
      Location:38 → 114
      Longin; Regulated-SNARE-like domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      14697239..14724110 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024983011.2 → XP_024838779.1  vesicle-trafficking protein SEC22c isoform X3

      Conserved Domains (1) summary
      pfam13774
      Location:38 → 114
      Longin; Regulated-SNARE-like domain

    2. XM_010817528.4 → XP_010815830.1  vesicle-trafficking protein SEC22c isoform X2

      UniProtKB/Swiss-Prot
      Q2YDJ2
      UniProtKB/TrEMBL
      A0A3Q1MF73
      Conserved Domains (1) summary
      pfam13774
      Location:38 → 114
      Longin; Regulated-SNARE-like domain

    3. XM_024983009.2 → XP_024838777.1  vesicle-trafficking protein SEC22c isoform X2

      UniProtKB/Swiss-Prot
      Q2YDJ2
      UniProtKB/TrEMBL
      A0A3Q1MF73
      Conserved Domains (1) summary
      pfam13774
      Location:38 → 114
      Longin; Regulated-SNARE-like domain

    4. XM_059879853.1 → XP_059735836.1  vesicle-trafficking protein SEC22c isoform X2

      UniProtKB/Swiss-Prot
      Q2YDJ2
      UniProtKB/TrEMBL
      A0A3Q1MF73

    5. XM_010817526.4 → XP_010815828.1  vesicle-trafficking protein SEC22c isoform X2

      UniProtKB/Swiss-Prot
      Q2YDJ2
      UniProtKB/TrEMBL
      A0A3Q1MF73
      Conserved Domains (1) summary
      pfam13774
      Location:38 → 114
      Longin; Regulated-SNARE-like domain

    6. XM_010817529.4 → XP_010815831.1  vesicle-trafficking protein SEC22c isoform X2

      UniProtKB/Swiss-Prot
      Q2YDJ2
      UniProtKB/TrEMBL
      A0A3Q1MF73
      Conserved Domains (1) summary
      pfam13774
      Location:38 → 114
      Longin; Regulated-SNARE-like domain

    7. XM_059879852.1 → XP_059735835.1  vesicle-trafficking protein SEC22c isoform X2

      UniProtKB/Swiss-Prot
      Q2YDJ2
      UniProtKB/TrEMBL
      A0A3Q1MF73

    8. XM_059879854.1 → XP_059735837.1  vesicle-trafficking protein SEC22c isoform X2

      UniProtKB/Swiss-Prot
      Q2YDJ2
      UniProtKB/TrEMBL
      A0A3Q1MF73

    9. XM_059879851.1 → XP_059735834.1  vesicle-trafficking protein SEC22c isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2YDJ2.1 GenPept UniProtKB/Swiss-Prot:Q2YDJ2

    Gene LinkOut

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