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    C11H9orf78 chromosome 11 C9orf78 homolog [ Bos taurus (domestic cattle) ]

    Gene ID: 535148, updated on 27-Dec-2024

    Summary

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    Official Symbol
    C11H9orf78provided by VGNC
    Official Full Name
    chromosome 11 C9orf78 homologprovided by VGNC
    Primary source
    VGNC:VGNC:52623
    See related
    BGD:BT22125; Ensembl:ENSBTAG00000020307
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See C11H9orf78 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (100206260..100214805, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene torsin family 1 member B Neighboring gene torsin family 1 member A Neighboring gene prefoldin subunit 2-like Neighboring gene ubiquitin specific peptidase 20 Neighboring gene formin binding protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC139215

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor C9orf78 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076048.1 → NP_001069516.1  splicing factor C9orf78 homolog

      See identical proteins and their annotated locations for NP_001069516.1

      Status: PROVISIONAL

      Source sequence(s)
      BC116053
      UniProtKB/TrEMBL
      A0AAA9TDL0, Q1JQC8
      Related
      ENSBTAP00000027065.3, ENSBTAT00000027065.4
      Conserved Domains (1) summary
      pfam07052
      Location:77 → 172
      Hep_59; Hepatocellular carcinoma-associated antigen 59

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      100206260..100214805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005213304.5 → XP_005213361.1  splicing factor C9orf78 homolog isoform X2

      UniProtKB/TrEMBL
      A0AAA9TDL0, A0AAA9TI25
      Related
      ENSBTAP00000097926.1, ENSBTAT00000115230.1
      Conserved Domains (1) summary
      pfam07052
      Location:81 → 176
      Hep_59; Hepatocellular carcinoma-associated antigen 59

    2. XM_005213303.5 → XP_005213360.1  splicing factor C9orf78 homolog isoform X1

      See identical proteins and their annotated locations for XP_005213360.1

      UniProtKB/TrEMBL
      A0AAA9TDL0, A0AAA9TYF0
      Related
      ENSBTAP00000102253.1, ENSBTAT00000090511.1
      Conserved Domains (1) summary
      pfam07052
      Location:101 → 196
      Hep_59; Hepatocellular carcinoma-associated antigen 59
    Nucleotide Protein Strain
    Heading Accession and Version

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