U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    NOP53 NOP53 ribosome biogenesis factor [ Bos taurus (domestic cattle) ]

    Gene ID: 506401, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    NOP53provided by VGNC
    Official Full Name
    NOP53 ribosome biogenesis factorprovided by VGNC
    Primary source
    VGNC:VGNC:32168
    See related
    BGD:BT15290; Ensembl:ENSBTAG00000021192
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    GLTSCR2
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NOP53 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (54648374..54657037)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132342871 Neighboring gene EH domain containing 2 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene small nucleolar RNA SNORD23 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene selenoprotein W

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC133834

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5S rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal large subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ribosome biogenesis protein NOP53
    Names
    glioma tumor suppressor candidate region gene 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038507.2 → NP_001033596.1  ribosome biogenesis protein NOP53

      See identical proteins and their annotated locations for NP_001033596.1

      Status: PROVISIONAL

      Source sequence(s)
      BC109969
      UniProtKB/TrEMBL
      Q2TBL5
      Related
      ENSBTAP00000040958.2, ENSBTAT00000043382.3
      Conserved Domains (1) summary
      pfam07767
      Location:59 → 451
      Nop53; Nop53 (60S ribosomal biogenesis)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      54648374..54657037
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059876555.1 → XP_059732538.1  ribosome biogenesis protein NOP53 isoform X1

    2. XM_005219206.5 → XP_005219263.2  ribosome biogenesis protein NOP53 isoform X2

      Conserved Domains (1) summary
      pfam07767
      Location:59 → 451
      Nop53; Nop53 (60S ribosomal biogenesis)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials