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    PHRF1 PHD and ring finger domains 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 100126170, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PHRF1provided by VGNC
    Official Full Name
    PHD and ring finger domains 1provided by VGNC
    Primary source
    VGNC:VGNC:32847
    See related
    Ensembl:ENSBTAG00000046359
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PHRF1 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (50699012..50721926, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene cadherin related family member 5 Neighboring gene interferon regulatory factor 7 Neighboring gene skin secretory protein xP2 Neighboring gene microRNA mir-210 Neighboring gene Ras association domain family member 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC157123

    General protein information

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    Preferred Names
    PHD and RING finger domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109963.2 → NP_001103433.2  PHD and RING finger domain-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      BC149467, BM483181
      UniProtKB/TrEMBL
      A0AAA9TIG1
      Conserved Domains (2) summary
      cd15536
      Location:181 → 226
      PHD_PHRF1; PHD finger found in PHD and RING finger domain-containing protein 1 (PHRF1)
      pfam13639
      Location:101 → 144
      zf-RING_2; Ring finger domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      50699012..50721926 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005227257.5 → XP_005227314.1  PHD and RING finger domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0AAA9TIG1
      Conserved Domains (2) summary
      cd15536
      Location:182 → 227
      PHD_PHRF1; PHD finger found in PHD and RING finger domain-containing protein 1 (PHRF1)
      pfam13639
      Location:102 → 145
      zf-RING_2; Ring finger domain

    2. XM_059882742.1 → XP_059738725.1  PHD and RING finger domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0AAA9TIG1

    3. XM_005227256.5 → XP_005227313.1  PHD and RING finger domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0AAA9TIG1
      Related
      ENSBTAP00000098258.1, ENSBTAT00000125154.1
      Conserved Domains (2) summary
      cd15536
      Location:182 → 227
      PHD_PHRF1; PHD finger found in PHD and RING finger domain-containing protein 1 (PHRF1)
      pfam13639
      Location:102 → 145
      zf-RING_2; Ring finger domain

    4. XM_059882741.1 → XP_059738724.1  PHD and RING finger domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TIG1, G3N2M4
      Related
      ENSBTAP00000056140.3, ENSBTAT00000066052.3
    Nucleotide Protein Strain
    Heading Accession and Version

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