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    ATRN attractin [ Bos taurus (domestic cattle) ]

    Gene ID: 281017, updated on 27-Dec-2024

    Summary

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    Official Symbol
    ATRNprovided by VGNC
    Official Full Name
    attractinprovided by VGNC
    Primary source
    VGNC:VGNC:26335
    See related
    Ensembl:ENSBTAG00000003848
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ATRN in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (51545361..51731831, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 33 Neighboring gene uncharacterized LOC132346920 Neighboring gene GDNF family receptor alpha 4 Neighboring gene glycine cleavage system H protein, mitochondrial-like Neighboring gene dynein axonemal assembly factor 9 Neighboring gene solute carrier family 4 member 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    attractin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173995.3 → NP_776420.1  attractin

      See identical proteins and their annotated locations for NP_776420.1

      Status: PROVISIONAL

      Source sequence(s)
      AF531101
      UniProtKB/TrEMBL
      C7DU20, F1MHW9, Q8MJ16
      Related
      ENSBTAP00000102138.1, ENSBTAT00000091435.1
      Conserved Domains (8) summary
      smart00423
      Location:634 → 677
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00041
      Location:119 → 234
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1048 → 1093
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:488 → 537
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:918 → 969
      PSI; Plexin repeat
      pfam13415
      Location:337 → 387
      Kelch_3; Galactose oxidase, central domain
      pfam13854
      Location:377 → 415
      Kelch_5; Kelch motif
      cl02432
      Location:774 → 906
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      51545361..51731831 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059892370.1 → XP_059748353.1  attractin isoform X2

      UniProtKB/TrEMBL
      C7DU20

    2. XM_005214485.5 → XP_005214542.3  attractin isoform X1

      UniProtKB/TrEMBL
      C7DU20
      Related
      ENSBTAP00000082764.1, ENSBTAT00000094146.1
      Conserved Domains (7) summary
      smart00423
      Location:634 → 677
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00041
      Location:119 → 234
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1048 → 1093
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:488 → 537
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:918 → 969
      PSI; Plexin repeat
      cl02432
      Location:774 → 906
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      cl28614
      Location:314 → 478
      BTB; Broad-Complex, Tramtrack and Bric a brac
    Nucleotide Protein Strain
    Heading Accession and Version

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