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    ZNF688 zinc finger protein 688 [ Bos taurus (domestic cattle) ]

    Gene ID: 786784, updated on 27-Dec-2024

    Summary

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    Gene symbol
    ZNF688
    Gene description
    zinc finger protein 688
    See related
    BGD:BT22514; Ensembl:ENSBTAG00000019357
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ZNF688 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (26732349..26737941, complement)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 768 Neighboring gene zinc finger protein 764 Neighboring gene zinc finger protein 689 Neighboring gene uncharacterized LOC132343862 Neighboring gene proline rich 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC148861

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 688

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081625.2 → NP_001075094.1  zinc finger protein 688

      See identical proteins and their annotated locations for NP_001075094.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133462
      UniProtKB/TrEMBL
      A2VDY1
      Related
      ENSBTAP00000024083.2, ENSBTAT00000024083.3
      Conserved Domains (6) summary
      smart00349
      Location:26 → 77
      KRAB; krueppel associated box
      COG5048
      Location:94 → 197
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:147 → 167
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:145 → 167
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:26 → 65
      KRAB; KRAB box
      pfam13465
      Location:160 → 184
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      26732349..26737941 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005224970.5 → XP_005225027.1  zinc finger protein 688 isoform X1

      See identical proteins and their annotated locations for XP_005225027.1

      Conserved Domains (6) summary
      smart00349
      Location:26 → 86
      KRAB; krueppel associated box
      COG5048
      Location:132 → 235
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:185 → 205
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:183 → 205
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:26 → 65
      KRAB; KRAB box
      pfam13465
      Location:198 → 222
      zf-H2C2_2; Zinc-finger double domain

    RNA

    1. XR_009492799.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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