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    SLC39A13 solute carrier family 39 member 13 [ Bos taurus (domestic cattle) ]

    Gene ID: 614946, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SLC39A13provided by VGNC
    Official Full Name
    solute carrier family 39 member 13provided by VGNC
    Primary source
    VGNC:VGNC:34861
    See related
    Ensembl:ENSBTAG00000019436
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SLC39A13 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (77240235..77248528)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene Spi-1 proto-oncogene Neighboring gene uncharacterized LOC132342368 Neighboring gene proteasome 26S subunit, ATPase 3 Neighboring gene receptor associated protein of the synapse

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC151732

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular zinc ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in zinc ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc transporter ZIP13
    Names
    ZIP-13
    solute carrier family 39 (zinc transporter), member 13
    zrt- and Irt-like protein 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098132.1 → NP_001091601.1  zinc transporter ZIP13 precursor

      See identical proteins and their annotated locations for NP_001091601.1

      Status: PROVISIONAL

      Source sequence(s)
      BC140552
      UniProtKB/Swiss-Prot
      A5D7H1
      UniProtKB/TrEMBL
      A0A3Q1MNH9
      Related
      ENSBTAP00000047569.4, ENSBTAT00000056812.4
      Conserved Domains (1) summary
      pfam02535
      Location:65 → 417
      Zip; ZIP Zinc transporter

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      77240235..77248528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005216506.5 → XP_005216563.1  zinc transporter ZIP13 isoform X1

      See identical proteins and their annotated locations for XP_005216563.1

      UniProtKB/TrEMBL
      A0A3Q1MNH9
      Related
      ENSBTAP00000071093.2, ENSBTAT00000066885.2
      Conserved Domains (1) summary
      pfam02535
      Location:65 → 358
      Zip; ZIP Zinc transporter

    2. XM_005216508.5 → XP_005216565.1  zinc transporter ZIP13 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MNH9
      Conserved Domains (1) summary
      pfam02535
      Location:65 → 298
      Zip; ZIP Zinc transporter
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A5D7H1.1 GenPept UniProtKB/Swiss-Prot:A5D7H1

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