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    CKAP2 cytoskeleton associated protein 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 515249, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CKAP2provided by VGNC
    Official Full Name
    cytoskeleton associated protein 2provided by VGNC
    Primary source
    VGNC:VGNC:27380
    See related
    Ensembl:ENSBTAG00000021162
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CKAP2 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 12 NC_037339.1 (21581302..21607193, complement)

    Chromosome 12 - NC_037339.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase Nek5-like Neighboring gene NIMA related kinase 3 Neighboring gene vacuolar protein sorting 36 homolog Neighboring gene thrombospondin type 1 domain containing 1 Neighboring gene U8 small nucleolar RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037339.1 Chromosome 12 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC148979

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of microtubule depolymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in microtubule cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytoskeleton-associated protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098032.2 → NP_001091501.1  cytoskeleton-associated protein 2

      See identical proteins and their annotated locations for NP_001091501.1

      Status: PROVISIONAL

      Source sequence(s)
      BC140680
      UniProtKB/Swiss-Prot
      A5D7U0
      Related
      ENSBTAP00000051947.1, ENSBTAT00000052675.2
      Conserved Domains (1) summary
      pfam15297
      Location:323 → 612
      CKAP2_C; Cytoskeleton-associated protein 2 C-terminus

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037339.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      21581302..21607193 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005213627.5 → XP_005213684.1  cytoskeleton-associated protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1M6K8
      Related
      ENSBTAP00000065628.2, ENSBTAT00000072918.2
      Conserved Domains (1) summary
      pfam15297
      Location:323 → 669
      CKAP2_C; Cytoskeleton-associated protein 2 C-terminus

    2. XM_010810702.4 → XP_010809004.1  cytoskeleton-associated protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M1T4
      Related
      ENSBTAP00000062026.2, ENSBTAT00000075334.2
      Conserved Domains (1) summary
      pfam15297
      Location:342 → 688
      CKAP2_C; Cytoskeleton-associated protein 2 C-terminus

    3. XM_005213629.5 → XP_005213686.1  cytoskeleton-associated protein 2 isoform X3

      Conserved Domains (1) summary
      pfam15297
      Location:275 → 621
      CKAP2_C; Cytoskeleton-associated protein 2 C-terminus
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A5D7U0.1 GenPept UniProtKB/Swiss-Prot:A5D7U0

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